TkA05G300010 | RubberDandelionOmics

Gene overview

TkA05G300010

Reference: TK1151 Chr: Chr05 Coordinates: 74005617-74008690 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1757 bp · TkA05G300010|TK1151|cDNA

TACAAACATCACCTTTGCAAACACCGTGTTCATGAGTGATTCTATCGAGAAGCGTCGTTCTGTGTTTAGTAGGTATTGCTAGTGATCTTGTCCCACTCCTAAATTGCAAGATCTGATGTTGTTTTGCAGCGATTAGAGGTCTAAAGTAAAAAAAGGAAAAAGAAATCGTCGTTACCAGGCGGAGGAGCTTTCATAACCGGGAAATTCGCGTCAAGATAAGAAAAAAGTCCGAAACTTCGGAAAACCGTCGTAACACCGCC...

CDS

Download CDS FASTA

1251 bp · TkA05G300010|TK1151|CDS

ATGGCAGCCTCTCCGTCACCACCGCCTCCGTCGCTGCCACACCGAAACAAACCCCTGATTAGAACCACCACCGCTGCATTATTTCACTCCTCTTTACACCGTCGTCGATCCCTCAGCGGCAATAGGGTTCGCATTCAGTGTGAACACATCAGCTTCGATAACGGGGCCCATCGCCACCACCTCGGACAACAACAACAACAACAATGGACTGTAGATTGTGTCACTGGAAGTGATCCAATTCACATTATTATCAAGCCTCC...

Protein

Download Protein FASTA

416 aa · TkA05G300010|TK1151|PROTEIN

MAASPSPPPPSLPHRNKPLIRTTTAALFHSSLHRRRSLSGNRVRIQCEHISFDNGAHRHHLGQQQQQQWTVDCVTGSDPIHIIIKPPSSKTSPMPMNSGLKSSKKVCLFYAAEMEALAQRIAAQSDAIELRSISWRKFEDGFPNLSIPNAHGIRGEHVAFLASFSSPGVIFEQLSVSYALPKLFTSSFTLVLPFFPTGTSERMEDEGDIATAFTLARFLSNIPISRGGPTSVVIYDIHALQERFYFDDNVLPCFESGIPL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G300010`
TK1151 ID	TkA05G300010
OH-1004 ID	LXL04_020735
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G300010

Location Chr05:74005617-74008690 (-)

Description Similar to PRS3: Ribose-phosphate pyrophosphokinase 3, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g10700`	Ribose-phosphate pyrophosphokinase 3, chloroplastic.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0723600`	Ribose-phosphate pyrophosphokinase 3, chloroplastic.	No verified direct reference in this release
`Os02g0714600`	Ribose-phosphate pyrophosphokinase 4.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_020735 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006015 5-phosphoribose 1-diphosphate biosynthetic process Biological Process

GO:0006164 purine nucleotide biosynthetic process Biological Process

GO:0002189 ribose phosphate diphosphokinase complex Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0004749 ribose phosphate diphosphokinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G10700

ath:AT2G42910

dosa:Os01g0723600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.957

Rank 1 · TkA05G300010 · TK1151

Mitochondrion0.049

Rank 2 · TkA05G300010 · TK1151

Nucleus0.030

Rank 3 · TkA05G300010 · TK1151

Cytoplasm0.022

Rank 4 · TkA05G300010 · TK1151

Cell membrane0.014

Rank 5 · TkA05G300010 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13793Pribosyltran_N107-220 aa

PF00156Pribosyltran248-356 aa

PF13793Pribosyltran_N314-330 aa

PF14572Pribosyl_synth315-363 aa

PF14681UPRTase316-349 aa

PF14572Pribosyl_synth385-404 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G300010	`PF13793`	Pribosyltran_N	107	220	4.3e-06	27.3
TkA05G300010	`PF00156`	Pribosyltran	248	356	1.3e-10	41.6
TkA05G300010	`PF13793`	Pribosyltran_N	314	330	4.3e-06	27.3
TkA05G300010	`PF14572`	Pribosyl_synth	315	363	2.6e-06	28.2
TkA05G300010	`PF14681`	UPRTase	316	349	0.18	12.0
TkA05G300010	`PF14572`	Pribosyl_synth	385	404	2.6e-06	28.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93Z66`	Arabidopsis thaliana	sp\|Q93Z66\|KPRS3_ARATH Ribose-phosphate pyrophosphokinase 3, chloroplastic	69.900%	Swiss-Prot	High
`Q8S2E5`	Oryza sativa subsp. japonica	sp\|Q8S2E5\|KPRS3_ORYSJ Ribose-phosphate pyrophosphokinase 3, chloroplastic	74.100%	Swiss-Prot	High
`Q6ZFT5`	Oryza sativa subsp. japonica	sp\|Q6ZFT5\|KPRS4_ORYSJ Ribose-phosphate pyrophosphokinase 4	74.700%	Swiss-Prot	High

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