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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G290410
Reference: TK1151 Chr: Chr05 Coordinates: 71774540-71779600 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1467 bp · TkA05G290410|TK1151|cDNA

ATGCCAAGAACAACAGTGAAACAAATCTTCAACCTTCGATCTTATGCCTATTATCGCCCAATTCCACTCCAATTCACCACAAATGCACTCGCCAACCAAGAAAAATTTAATCTTGTTATTTCAAAAGTTCAATCCGGAACTGGAAGGACCGATAATGAAATATTCGAGTCTCTCATCCACGATCAATCTTGTACCACCATACCCATCTCTGACAACCTTATATCCCACCTATTACACCGATTCAAAGACGACTGGAAGTC...

CDS

Download CDS FASTA

1467 bp · TkA05G290410|TK1151|CDS

ATGCCAAGAACAACAGTGAAACAAATCTTCAACCTTCGATCTTATGCCTATTATCGCCCAATTCCACTCCAATTCACCACAAATGCACTCGCCAACCAAGAAAAATTTAATCTTGTTATTTCAAAAGTTCAATCCGGAACTGGAAGGACCGATAATGAAATATTCGAGTCTCTCATCCACGATCAATCTTGTACCACCATACCCATCTCTGACAACCTTATATCCCACCTATTACACCGATTCAAAGACGACTGGAAGTC...

Protein

Download Protein FASTA

488 aa · TkA05G290410|TK1151|PROTEIN

MPRTTVKQIFNLRSYAYYRPIPLQFTTNALANQEKFNLVISKVQSGTGRTDNEIFESLIHDQSCTTIPISDNLISHLLHRFKDDWKSSLAIFKWAESQKGHTPLPNSYAIILDTLGKSKQIEKMMSLVTQTHHHDVTLTSISKVMRRLCGAGKWQKAVKIFDDLNTFGLQKNTESMNLLLDTLYKENKVEQARKIFLELKSCIPPTPHTFNIFIHGWCKVNRVEEAHWTIQEMKGYGFSPSIITYSTIIKSYCQNHNFDN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G290410
TK1151 IDTkA05G290410
OH-1004 IDLXL04_020685
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)94.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G290410
LocationChr05:71774540-71779600 (+)
DescriptionSimilar to At3g04130: Pentatricopeptide repeat-containing protein At3g04130, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g04130 Pentatricopeptide repeat-containing protein At3g04130, mitochondrial. No verified direct reference in this release
At3g22670 Pentatricopeptide repeat-containing protein At3g22670, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_020685 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0008380 RNA splicing Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G74900
ath:AT3G04130
ath:AT3G22670
ath:AT5G43820
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.881
Rank 1 · TkA05G290410 · TK1151
Plastid0.050
Rank 2 · TkA05G290410 · TK1151
Nucleus0.048
Rank 3 · TkA05G290410 · TK1151
Cytoplasm0.032
Rank 4 · TkA05G290410 · TK1151
Cell membrane0.011
Rank 5 · TkA05G290410 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N32-124 aa
PF28737VPS18_solenoid_2nd56-132 aa
PF17107SesA71-128 aa
PF23276TPR_2483-163 aa
PF13812PPR_398-117 aa
PF17177PPR_long102-191 aa
PF13041PPR_2107-128 aa
PF01535PPR107-127 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G290410PF29070MSC6_N321244.7e-2072.8
TkA05G290410PF28737VPS18_solenoid_2nd561320.2511.9
TkA05G290410PF17107SesA711280.003818.1
TkA05G290410PF23276TPR_24831631.3e-1661.4
TkA05G290410PF13812PPR_3981171e-30106.3
TkA05G290410PF17177PPR_long1021913.7e-1866.4
TkA05G290410PF13041PPR_21071282.9e-56188.1
TkA05G290410PF01535PPR1071276.1e-43142.8
TkA05G290410PF12921ATP131111300.0007920.0
TkA05G290410PF30761GftB-GlyA-F_C1151920.1812.3
TkA05G290410PF26719TPR_Atp25_C1171960.008516.1
TkA05G290410PF10037MRP-S271221980.0001621.5
TkA05G290410PF29070MSC6_N1362664.7e-2072.8
TkA05G290410PF13041PPR_21441692.9e-56188.1
TkA05G290410PF01535PPR1441686.1e-43142.8
TkA05G290410PF23276TPR_241442261.3e-1661.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M8W9Arabidopsis thalianasp|Q9M8W9|PP211_ARATH Pentatricopeptide repeat-containing protein At3g04130, mitochondrial51.100%Swiss-ProtHigh
Q9LUJ4Arabidopsis thalianasp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670, mitochondrial47.900%Swiss-ProtMedium

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