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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G247660
Reference: TK1151 Chr: Chr05 Coordinates: 61584906-61588290 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1458 bp · TkA05G247660|TK1151|cDNA

ATGCAGGTTGAGCTAAACGAGTTTGAAAGAAACAAAGTATGGAGGCTAATTCCCACTCCACCAAATGTTTCAGTCGTAGGCCTAAAATGGGTCTTCCGAAACAAAGTAGACAAAGAAGGGAATGTGATTCGAAACAAGGCAAGACTGGTAGTAAAAGGCTATTGTCAACAAGAAGGTATAGACTATGAAGAGACGTTTGCTCCTGTTGCAAGACTCGAAGCTGTTCGTATCTTCTTAGCATATGCTGCAAGCAAGAACTT...

CDS

Download CDS FASTA

1458 bp · TkA05G247660|TK1151|CDS

ATGCAGGTTGAGCTAAACGAGTTTGAAAGAAACAAAGTATGGAGGCTAATTCCCACTCCACCAAATGTTTCAGTCGTAGGCCTAAAATGGGTCTTCCGAAACAAAGTAGACAAAGAAGGGAATGTGATTCGAAACAAGGCAAGACTGGTAGTAAAAGGCTATTGTCAACAAGAAGGTATAGACTATGAAGAGACGTTTGCTCCTGTTGCAAGACTCGAAGCTGTTCGTATCTTCTTAGCATATGCTGCAAGCAAGAACTT...

Protein

Download Protein FASTA

485 aa · TkA05G247660|TK1151|PROTEIN

MQVELNEFERNKVWRLIPTPPNVSVVGLKWVFRNKVDKEGNVIRNKARLVVKGYCQQEGIDYEETFAPVARLEAVRIFLAYAASKNFQVYQMDVKCAFLNGELEETVYVEQPPGFVNEKFPDHCYILDKAVYGLKQAPRAWYETVTKFLKLSNFKQGAVDPTLFRKKILTTSLKLNSCLEDKWNISHSSSTSDTHHRSVMSITQTSTEDKRVSDVPCSPSCSAKLKLCQKQVDNLIREIEDLKYDVYTLRKSQKPLKEKL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G247660
TK1151 IDTkA05G247660
OH-1004 IDLXL04_028986
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)97.000
Protein coverage (%)TK1151 34.639 / OH-1004 7.520
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G247660
LocationChr05:61584906-61588290 (-)
DescriptionSimilar to GIP: Copia protein
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028986 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006281 DNA repair Biological Process
GO:0006310 DNA recombination Biological Process
GO:0006508 proteolysis Biological Process
GO:0015074 DNA integration Biological Process
GO:0071897 DNA biosynthetic process Biological Process
GO:0042575 DNA polymerase complex Cellular Component
GO:0003676 nucleic acid binding Molecular Function
GO:0003964 RNA-directed DNA polymerase activity Molecular Function
GO:0004190 aspartic-type endopeptidase activity Molecular Function
GO:0004519 endonuclease activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.540
Rank 1 · TkA05G247660 · TK1151
Nucleus0.462
Rank 2 · TkA05G247660 · TK1151
Mitochondrion0.057
Rank 3 · TkA05G247660 · TK1151
Cell membrane0.039
Rank 4 · TkA05G247660 · TK1151
Endoplasmic reticulum0.037
Rank 5 · TkA05G247660 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07727RVT_211-167 aa
PF15434FAM104174-217 aa
PF08614ATG16188-280 aa
PF03915AIP3201-280 aa
PF01717Meth_synt_2202-262 aa
PF20993CENPH209-283 aa
PF28869LMNTD2_N211-279 aa
PF10234Cluap1226-281 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G247660PF07727RVT_2111671.4e-53182.7
TkA05G247660PF15434FAM1041742178.87.6
TkA05G247660PF08614ATG161882800.002818.6
TkA05G247660PF03915AIP32012800.00317.5
TkA05G247660PF01717Meth_synt_22022620.01815.1
TkA05G247660PF20993CENPH2092830.1912.6
TkA05G247660PF28869LMNTD2_N2112790.04315.0
TkA05G247660PF10234Cluap12262810.02115.0
TkA05G247660PF17749MIP-T3_C2262950.03714.8
TkA05G247660PF07851TMEM120A-B2263090.4810.3
TkA05G247660PF30882CCDC146_CC_N2282830.04313.9
TkA05G247660PF07989Cnn_1N2282860.1513.0
TkA05G247660PF16454PI3K_P85_iSH22292830.006516.8
TkA05G247660PF06005ZapB2292790.1713.1
TkA05G247660PF27575Map3k7cl2292620.9810.5
TkA05G247660PF06419COG6_N2302840.2212.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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