TkA05G241010 | RubberDandelionOmics

Gene overview

TkA05G241010

Reference: TK1151 Chr: Chr05 Coordinates: 60062567-60083015 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1905 bp · TkA05G241010|TK1151|cDNA

ATGGCAAACGTTCCTGCTTCAAACGTGATTTACTCCATCTCTGTTGCTAACAGCCTAGGTCATGGTAATCGTGCCCCTATTTTGACCTCCCCTGAATACTTCTCATGGGTGGATCGAATTCAGCACTATCTCGCTGGGGACGATGAGGACATCTGGACGTACATTTCCACTGGGAAACATACTCCAGAGTTTCTCTCGGAGATTGATACTCTGATTACCGAACCTGCGGCTAATGCTGAAACACTGAGAAACATTCAGCT...

CDS

Download CDS FASTA

1905 bp · TkA05G241010|TK1151|CDS

ATGGCAAACGTTCCTGCTTCAAACGTGATTTACTCCATCTCTGTTGCTAACAGCCTAGGTCATGGTAATCGTGCCCCTATTTTGACCTCCCCTGAATACTTCTCATGGGTGGATCGAATTCAGCACTATCTCGCTGGGGACGATGAGGACATCTGGACGTACATTTCCACTGGGAAACATACTCCAGAGTTTCTCTCGGAGATTGATACTCTGATTACCGAACCTGCGGCTAATGCTGAAACACTGAGAAACATTCAGCT...

Protein

Download Protein FASTA

634 aa · TkA05G241010|TK1151|PROTEIN

MANVPASNVIYSISVANSLGHGNRAPILTSPEYFSWVDRIQHYLAGDDEDIWTYISTGKHTPEFLSEIDTLITEPAANAETLRNIQLGIPAPYMAKTMTEFLSAIPHELYTQLDNETKQTPFGIWSALKTRFEGNERILKTRRQTTLMYFDSFKMNSNEKLVNAYNRFNAIVNNVTLLKCAKTQEEFNMKFSNSISHSWSTIALVILQTSPHLDSLSLYDLYAEEVPIKPMEKYTPMQNTNRSMIPYDNQAALEQPIENG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G241010`
TK1151 ID	TkA05G241010
OH-1004 ID	LXL04_006662
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	33.800
Protein coverage (%)	TK1151 49.527 / OH-1004 21.859 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA05G241010`
Location	Chr05:60062567-60083015 (-)
Description	Similar to AtMg00820: Uncharacterized mitochondrial protein AtMg00820
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_006662` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006310 DNA recombination Biological Process GO:0006508 proteolysis Biological Process GO:0015074 DNA integration Biological Process GO:0005739 mitochondrion Cellular Component GO:0003676 nucleic acid binding Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004190 aspartic-type endopeptidase activity Molecular Function GO:0004519 endonuclease activity Molecular Function GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.633

Rank 1 · TkA05G241010 · TK1151

Nucleus0.361

Rank 2 · TkA05G241010 · TK1151

Cell membrane0.074

Rank 3 · TkA05G241010 · TK1151

Mitochondrion0.056

Rank 4 · TkA05G241010 · TK1151

Endoplasmic reticulum0.048

Rank 5 · TkA05G241010 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14223Retrotran_gag_2100-211 aa

PF04615Utp14334-539 aa

PF00098zf-CCHC489-505 aa

PF14223Retrotran_gag_2499-525 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G241010	`PF14223`	Retrotran_gag_2	100	211	1.9e-07	31.7
TkA05G241010	`PF04615`	Utp14	334	539	1.1	8.5
TkA05G241010	`PF00098`	zf-CCHC	489	505	0.00021	22.0
TkA05G241010	`PF14223`	Retrotran_gag_2	499	525	1.9e-07	31.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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