TkA05G165440 | RubberDandelionOmics

Gene overview

TkA05G165440

Reference: TK1151 Chr: Chr05 Coordinates: 42562854-42564556 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1053 bp · TkA05G165440|TK1151|cDNA

ATGGGGGGAAGCGAGGCCGCCGTGGATGTTTGCGCTAGTCGGAATGTCGATGTGTGCCGACCGTCGGTTATCCAGGAGGTGGCGATGAGCGCCGACTCGTGTTCTGATTCAGGGCAAGAAAAGAGAACAGAGACAAGAGAGTGTAGAGACTCGATGAGAGAAAGAGAACCTGAACTGGGACTGATTCGTCAGTCCTACATACATGATATCCAAGAGCTACTACTGCTGCTGAAACAGTTGCTGCTGAAACAGTTAGCGCA...

CDS

Download CDS FASTA

1053 bp · TkA05G165440|TK1151|CDS

ATGGGGGGAAGCGAGGCCGCCGTGGATGTTTGCGCTAGTCGGAATGTCGATGTGTGCCGACCGTCGGTTATCCAGGAGGTGGCGATGAGCGCCGACTCGTGTTCTGATTCAGGGCAAGAAAAGAGAACAGAGACAAGAGAGTGTAGAGACTCGATGAGAGAAAGAGAACCTGAACTGGGACTGATTCGTCAGTCCTACATACATGATATCCAAGAGCTACTACTGCTGCTGAAACAGTTGCTGCTGAAACAGTTAGCGCA...

Protein

Download Protein FASTA

350 aa · TkA05G165440|TK1151|PROTEIN

MGGSEAAVDVCASRNVDVCRPSVIQEVAMSADSCSDSGQEKRTETRECRDSMREREPELGLIRQSYIHDIQELLLLLKQLLLKQLAQLKEKEAAETVAATTAEKAAAAAAAKATRGAEATKSTADKPPSSKTKSAPQPPTQPPPPPSPPKQQPSKKSPPKQPPLSPKQQETIPPHQSSPKEGEDEFSGHLSTALTVPRRPDSPSRSITAPPFKNIIFKRKRAEPVSPPKQQDQPSPPPKKKTKTVRRKSLSTVVFHGVTR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G165440`
TK1151 ID	TkA05G165440
OH-1004 ID	LXL04_007637
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	74.100
Protein coverage (%)	TK1151 52.286 / OH-1004 14.369 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA05G165440`
Location	Chr05:42562854-42564556 (+)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_007637` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.897

Rank 1 · TkA05G165440 · TK1151

Cytoplasm0.196

Rank 2 · TkA05G165440 · TK1151

Cell membrane0.026

Rank 3 · TkA05G165440 · TK1151

Mitochondrion0.024

Rank 4 · TkA05G165440 · TK1151

Endoplasmic reticulum0.014

Rank 5 · TkA05G165440 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14719PID_269-137 aa

PF16717RAC_head70-120 aa

PF15047DUF453374-115 aa

PF10428SOG2120-311 aa

PF16717RAC_head240-325 aa

PF15047DUF4533292-336 aa

PF14719PID_2326-341 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G165440	`PF14719`	PID_2	69	137	0.17	12.5
TkA05G165440	`PF16717`	RAC_head	70	120	1.3	10.6
TkA05G165440	`PF15047`	DUF4533	74	115	0.056	13.8
TkA05G165440	`PF10428`	SOG2	120	311	3.5	7.7
TkA05G165440	`PF16717`	RAC_head	240	325	1.3	10.6
TkA05G165440	`PF15047`	DUF4533	292	336	0.056	13.8
TkA05G165440	`PF14719`	PID_2	326	341	0.17	12.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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