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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G148590
Reference: TK1151 Chr: Chr05 Coordinates: 38533172-38548994 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2250 bp · TkA05G148590|TK1151|cDNA

ATGGGTGTAAGATCAAAGATGAAAGTTGATGAAGATGATGTTCTTGCTAGACCTTCAAACTTGTATGAAACTTCTTGGATCTTGAATCATAATTTCCAAGAAAATGAGTTAGGAGATGTTCAACAAAATATACCCCAAAGGGGTGTCACACGTCGAAGGGTTTTGAAGCTTTTACCGGTTCTCGATTTTGGAAGGAAGTGGGATGGTCTCGATTTTGGAAGGAAAGGAGTCAATCACGCACACGAGAGGAAGTGGGGTCA...

CDS

Download CDS FASTA

2250 bp · TkA05G148590|TK1151|CDS

ATGGGTGTAAGATCAAAGATGAAAGTTGATGAAGATGATGTTCTTGCTAGACCTTCAAACTTGTATGAAACTTCTTGGATCTTGAATCATAATTTCCAAGAAAATGAGTTAGGAGATGTTCAACAAAATATACCCCAAAGGGGTGTCACACGTCGAAGGGTTTTGAAGCTTTTACCGGTTCTCGATTTTGGAAGGAAGTGGGATGGTCTCGATTTTGGAAGGAAAGGAGTCAATCACGCACACGAGAGGAAGTGGGGTCA...

Protein

Download Protein FASTA

749 aa · TkA05G148590|TK1151|PROTEIN

MGVRSKMKVDEDDVLARPSNLYETSWILNHNFQENELGDVQQNIPQRGVTRRRVLKLLPVLDFGRKWDGLDFGRKGVNHAHERKWGHDYVSTVFDNFSANVVVNGATVNLGLWDTAGGLQQIKTTELSGADVFILAFSLISKASYENICKKWFLELKHYAPGVPIIIVGTKIDLRDDKQFFADHPNAVPITTTQFIFFYTAMGNERSNSYWEANLPPNYDRVGIENFIRAKYEDKRWVNKEGREIPPPAPIVQQQEEKAL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G148590
TK1151 IDTkA05G148590
OH-1004 IDLXL04_020646
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)98.200
Protein coverage (%)TK1151 14.553 / OH-1004 19.056
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G148590
LocationChr05:38533172-38548994 (-)
DescriptionSimilar to RHO1: Rac-like GTP-binding protein RHO1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g17800 Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation. No verified direct reference in this release
At3g51300 May be involved in cell polarity control during the actin-dependent tip growth of pollen tubes. No verified direct reference in this release
At4g35950 May be involved in cell polarity control during the actin-dependent tip growth of pollen tubes. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_020646 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007015 actin filament organization Biological Process
GO:0007163 establishment or maintenance of cell polarity Biological Process
GO:0007165 signal transduction Biological Process
GO:0007264 small GTPase-mediated signal transduction Biological Process
GO:0008360 regulation of cell shape Biological Process
GO:0009734 auxin-activated signaling pathway Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0009860 pollen tube growth Biological Process
GO:0017157 regulation of exocytosis Biological Process
GO:0030833 regulation of actin filament polymerization Biological Process
GO:0030834 regulation of actin filament depolymerization Biological Process
GO:0030865 cortical cytoskeleton organization Biological Process
KEGG gene cross-reference
ath:AT2G17800
ath:AT3G51300
ath:AT4G35950
bvg:104895157
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.697
Rank 1 · TkA05G148590 · TK1151
Nucleus0.349
Rank 2 · TkA05G148590 · TK1151
Mitochondrion0.072
Rank 3 · TkA05G148590 · TK1151
Cell membrane0.068
Rank 4 · TkA05G148590 · TK1151
Endoplasmic reticulum0.063
Rank 5 · TkA05G148590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08477Roc79-173 aa
PF00071Ras83-184 aa
PF26538DUF817792-110 aa
PF00686CBM_2096-120 aa
PF22827GldL_N97-114 aa
PF25300Fn3_Dep-1_3rd124-145 aa
PF21310OCRL-like_ASH126-153 aa
PF02991ATG8141-201 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G148590PF08477Roc791737.4e-2897.9
TkA05G148590PF00071Ras831842.2e-59200.4
TkA05G148590PF26538DUF8177921102.39.3
TkA05G148590PF00686CBM_20961200.001718.8
TkA05G148590PF22827GldL_N971143.38.7
TkA05G148590PF25300Fn3_Dep-1_3rd1241450.004417.6
TkA05G148590PF21310OCRL-like_ASH1261530.0001123.0
TkA05G148590PF02991ATG81412010.05114.5
TkA05G148590PF23272DUF70751501810.0004820.2
TkA05G148590PF03481Sua5_C1571770.002819.0
TkA05G148590PF22827GldL_N1922163.38.7
TkA05G148590PF01412ArfGap1972401.3e-1764.7
TkA05G148590PF02903Alpha-amylase_N2022420.07213.9
TkA05G148590PF11910NdhO2512730.02415.3
TkA05G148590PF00071Ras2953922.2e-59200.4
TkA05G148590PF26538DUF81773003182.39.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q38902Arabidopsis thalianasp|Q38902|RAC1_ARATH Rac-like GTP-binding protein ARAC179.100%Swiss-ProtLow
P92978Arabidopsis thalianasp|P92978|RAC11_ARATH Rac-like GTP-binding protein ARAC1178.200%Swiss-ProtLow
Q9SBJ6Arabidopsis thalianasp|Q9SBJ6|RAC6_ARATH Rac-like GTP-binding protein ARAC678.200%Swiss-ProtLow

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