RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G100670
Reference: TK1151 Chr: Chr05 Coordinates: 27078858-27081480 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2021 bp · TkA05G100670|TK1151|cDNA

CTCTTGTATATGTAATATACAATTAACAATTACATTGTTCATTCTTGACTAAAAATAGTCAACAATATATTTGAATTTTTTTTTGGCGGAGAACGTAAAAAAGATGGACCATCATCTGCATGATCCTTGGAATCTATTAATAGCAAAAGCTATGAATTTCTTTTCAAATAGACACTAGACATATTACCGTTAACATACTCTTCCAATCACTAAACCCTCATCTTCTTGATCCTTCAAGAACACGTAAACAAGGCAATTGA...

CDS

Download CDS FASTA

1461 bp · TkA05G100670|TK1151|CDS

ATGTGGACGAACAAAGACTCGGCCAATTCAACTCCAAGAGGATTTCCGTTCTCCACACCTCAGCCGGAGAAGAAGCGAACCTATTCTTCTCCGCCATACCCGATTCGCCAACCACCACTTCCGTCGTCAGAGAAGAAATGGACGCCACCGCAATCTAGTAACACTAATAGTCTCTTCCATGTCATCCACAAAGTCCCCGCCGGTGATTCTCCATACGTCAGAGCCAAACATGTTCAGTTAGTGGACAACAATCCAAGCAA...

Protein

Download Protein FASTA

486 aa · TkA05G100670|TK1151|PROTEIN

MWTNKDSANSTPRGFPFSTPQPEKKRTYSSPPYPIRQPPLPSSEKKWTPPQSSNTNSLFHVIHKVPAGDSPYVRAKHVQLVDNNPSKAVSMFWAAINSGDRVDSALKDMAVVMKQLNRSDEAIEAIKSFRHLCPLDAQESLDNILLELYKRSGRIDEQIELLELKLKHIEEATCVNGNRTKLARSQGKKIQITMGQEYSRLLGNLAWAHLQQDNYKLAEEIYRKALSLEPDKNKRCNLAICLMYMDKMTEAKFLLSTVKD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G100670
TK1151 IDTkA05G100670
OH-1004 IDLXL04_019885
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.200
Protein coverage (%)TK1151 99.794 / OH-1004 88.991
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G100670
LocationChr05:27078858-27081480 (-)
DescriptionSimilar to MS5: Protein POLLENLESS 3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g20900 Essential for male fertility, especially for microspore and pollen grain production.
Meiotic progression in Arabidopsis is governed by complex regulatory interactions between SMG7, TDM1, and the meiosis I-specific cyclin TAM.2010 · DOI: 10.1105/tpc.110.078378
At3g51280 Probably involved in the regulation of cell division. No verified direct reference in this release
At5g48850 Involved in the utilization of stored sulfate under sulfur- deficient conditions.
A sulphur deficiency-induced gene, sdi1, involved in the utilization of stored sulphate pools under sulphur-limiting conditions has potential as a diagnostic indicator of sulphur nutritional status.2009 · DOI: 10.1111/j.1467-7652.2008.00391.x
At5g44330 Probably involved in the regulation of cell division. No verified direct reference in this release
At1g04770 Involved in the utilization of stored sulfate under sulfur-deficient conditions. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019885 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006792 regulation of sulfur utilization Biological Process
GO:0007140 male meiotic nuclear division Biological Process
GO:0009556 microsporogenesis Biological Process
GO:0009658 chloroplast organization Biological Process
GO:0010438 cellular response to sulfur starvation Biological Process
GO:0010439 regulation of glucosinolate biosynthetic process Biological Process
GO:0017148 negative regulation of translation Biological Process
GO:0051301 cell division Biological Process
GO:0051321 meiotic cell cycle Biological Process
GO:0000932 P-body Cellular Component
GO:0005634 nucleus Cellular Component
GO:0017053 transcription repressor complex Cellular Component
KEGG gene cross-reference
ath:AT1G04770
ath:AT3G51280
ath:AT4G20900
ath:AT5G44330
ath:AT5G48850
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.410
Rank 1 · TkA05G100670 · TK1151
Nucleus0.337
Rank 2 · TkA05G100670 · TK1151
Cell membrane0.172
Rank 3 · TkA05G100670 · TK1151
Plastid0.133
Rank 4 · TkA05G100670 · TK1151
Endoplasmic reticulum0.071
Rank 5 · TkA05G100670 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25068ARM_TT21_4th86-226 aa
PF30153TPR_YpiA_C87-136 aa
PF13424TPR_1299-125 aa
PF14559TPR_19104-127 aa
PF07719TPR_2105-127 aa
PF13428TPR_14105-137 aa
PF13431TPR_17105-124 aa
PF00515TPR_1106-125 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G100670PF25068ARM_TT21_4th862260.08513.8
TkA05G100670PF30153TPR_YpiA_C871360.1813.2
TkA05G100670PF13424TPR_12991251.6e-0628.9
TkA05G100670PF14559TPR_191041272.1e-0628.7
TkA05G100670PF07719TPR_21051271.1e-0835.3
TkA05G100670PF13428TPR_141051373.8e-0730.9
TkA05G100670PF13431TPR_171051241.510.0
TkA05G100670PF00515TPR_11061258.8e-1038.7
TkA05G100670PF13176TPR_71071250.0004920.7
TkA05G100670PF13174TPR_61091310.001220.0
TkA05G100670PF12895ANAPC31091270.00318.6
TkA05G100670PF29407CFAP70_TPR_C1091640.006616.7
TkA05G100670PF07721TPR_41091220.2312.9
TkA05G100670PF13181TPR_81141271.9e-0731.4
TkA05G100670PF13432TPR_161161300.01216.7
TkA05G100670PF29386CFAP70_mid_TPR1181320.1912.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SUC3Arabidopsis thalianasp|Q9SUC3|MS5_ARATH Protein POLLENLESS 345.500%Swiss-ProtMedium
Q9SD20Arabidopsis thalianasp|Q9SD20|MS5L2_ARATH Protein POLLENLESS 3-LIKE 258.200%Swiss-ProtMedium
Q8GXU5Arabidopsis thalianasp|Q8GXU5|SDI1_ARATH Protein SULFUR DEFICIENCY-INDUCED 161.100%Swiss-ProtLow
Q9FKV5Arabidopsis thalianasp|Q9FKV5|MS5L1_ARATH Protein POLLENLESS 3-LIKE 156.200%Swiss-ProtMedium
Q8L730Arabidopsis thalianasp|Q8L730|SDI2_ARATH Protein SULFUR DEFICIENCY-INDUCED 255.600%Swiss-ProtLow

JBrowse

View in Genome Browser