RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G092910
Reference: TK1151 Chr: Chr05 Coordinates: 25074660-25075382 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

723 bp · TkA05G092910|TK1151|cDNA

ATGGCAAAGAAGAGAAAACACAAGCATTCCTCTGAATATAGAACAAAAAAGAGATCCAGAATCATTGAGTCTTCTGAAAAAGGCTCAGACAACGATGATAGGTCTGGTTTTGGATCAGACAACACACCTCCTATCCAGAGTCTGAACCGTCCTGAAGTGCACCCACAAGACTGGAGCAAGCCTCCGAAAACTGGTTCAAAACCAGGCGAAGACAGTCTTTCACCCAACTCCAAAAAATTCAAGTCAGCTAACCCTAAAAA...

CDS

Download CDS FASTA

723 bp · TkA05G092910|TK1151|CDS

ATGGCAAAGAAGAGAAAACACAAGCATTCCTCTGAATATAGAACAAAAAAGAGATCCAGAATCATTGAGTCTTCTGAAAAAGGCTCAGACAACGATGATAGGTCTGGTTTTGGATCAGACAACACACCTCCTATCCAGAGTCTGAACCGTCCTGAAGTGCACCCACAAGACTGGAGCAAGCCTCCGAAAACTGGTTCAAAACCAGGCGAAGACAGTCTTTCACCCAACTCCAAAAAATTCAAGTCAGCTAACCCTAAAAA...

Protein

Download Protein FASTA

240 aa · TkA05G092910|TK1151|PROTEIN

MAKKRKHKHSSEYRTKKRSRIIESSEKGSDNDDRSGFGSDNTPPIQSLNRPEVHPQDWSKPPKTGSKPGEDSLSPNSKKFKSANPKKTDAEIRAFQKVKRKRLRKQSKTSFLASVISDTTKDDNDKDEEEKENEEEEEEEEEEEEEEEEEKVEEKEDDEGSEDETVFPLNQTVNQSQSMPKLTINSGKISIEIDSDDNTPAKKSSSSPPHHSSKYATEDPVSRTEFQNLASVVQALDSKA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G092910
TK1151 IDTkA05G092910
OH-1004 IDLXL04_020521
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)67.900
Protein coverage (%)TK1151 100.000 / OH-1004 63.851
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G092910
LocationChr05:25074660-25075382 (+)
DescriptionNo functional description available
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_020521 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)No functional description available
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.933
Rank 1 · TkA05G092910 · TK1151
Cytoplasm0.182
Rank 2 · TkA05G092910 · TK1151
Mitochondrion0.021
Rank 3 · TkA05G092910 · TK1151
Cell membrane0.017
Rank 4 · TkA05G092910 · TK1151
Extracellular0.008
Rank 5 · TkA05G092910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08555FAM32A3-104 aa
PF00582Usp91-159 aa
PF05997Nop5293-155 aa
PF06213CobT94-164 aa
PF03987Autophagy_act_C96-172 aa
PF04147Nop1497-231 aa
PF06524NOA36108-152 aa
PF19056WD40_2110-181 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G092910PF08555FAM32A31040.008217.6
TkA05G092910PF00582Usp911590.6911.2
TkA05G092910PF05997Nop52931550.5310.5
TkA05G092910PF06213CobT941640.4110.8
TkA05G092910PF03987Autophagy_act_C961726.47.4
TkA05G092910PF04147Nop14972310.03313.2
TkA05G092910PF06524NOA361081520.09112.8
TkA05G092910PF19056WD40_21101811.97.8
TkA05G092910PF06237SLC52_ribofla_tr1101704.66.9
TkA05G092910PF07168Ureide_permease1111568.15.8
TkA05G092910PF12226Astro_capsid_p1141750.89.5
TkA05G092910PF17110TFB61151574.37.8
TkA05G092910PF07222PBP_sp321151548.86.2
TkA05G092910PF04931DNA_pol_phi1161650.1910.6
TkA05G092910PF23798Beta-prop_SPT81161795.36.5
TkA05G092910PF27580EVI51182130.1212.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser