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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G081920
Reference: TK1151 Chr: Chr05 Coordinates: 22185267-22188585 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2456 bp · TkA05G081920|TK1151|cDNA

GAAAAAAGAAACTTAGGGTCATACTGCGCAATTGCAAAATCTGTCTTTTACGGTGTCGTTCGGCAGATCATTTCACTTTCCGCGTTTTATGGTACCACCACCACTCGCTCAACTATCAGTTGCCTGCAAAACCCTAACAAACCCCTCGGTGTTAAACGTACGTAGAGCTACTCAGCTACAGAACTTCGGTCGGCGATGGAAGCGACGGCGAAGGAGCTTACCGTTGGACAACCACCCAATATTCCGACCGAGCCACCTCC...

CDS

Download CDS FASTA

2004 bp · TkA05G081920|TK1151|CDS

ATGGAAGCGACGGCGAAGGAGCTTACCGTTGGACAACCACCCAATATTCCGACCGAGCCACCTCCGTTGGCCAGAAAGCCGGTGACTGAAATGTCAGCGGAAGAGATGGTGGCGAAATCTATAGTTCCGGTGAAGAAGGAATTTATCTATCCTGTACCTAACCGACTTAATAGTGATAACAATGGACCACCAACTGACGCTGTTCCTGCCTCCACCACCTCCTCCGCACCTGTCAGTAACGAGAAGAAATCGAAAAGACA...

Protein

Download Protein FASTA

667 aa · TkA05G081920|TK1151|PROTEIN

MEATAKELTVGQPPNIPTEPPPLARKPVTEMSAEEMVAKSIVPVKKEFIYPVPNRLNSDNNGPPTDAVPASTTSSAPVSNEKKSKRQLKRERNQEKQSTRNLCPMVAKTGITDSCPYNEKCRFSHNIEAFKAQKPADLEGNCPFEGNEEGPCPYGLGCRFLGTHKTNSASGIPNGLKNSEINGLKKDVQRLLWKNKMKFPKADAQLKVLGLMGPTKSKKTPIPNNEEENGCGEMGTDPIVQIQVPEKAESNNNGDDPRPQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G081920
TK1151 IDTkA05G081920
OH-1004 IDLXL04_019732
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G081920
LocationChr05:22185267-22188585 (-)
DescriptionSimilar to At4g38890: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g38890 Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0117600 Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019732 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002943 tRNA dihydrouridine synthesis Biological Process
GO:0006397 mRNA processing Biological Process
GO:0006417 regulation of translation Biological Process
GO:0005634 nucleus Cellular Component
GO:0005773 vacuole Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0017150 tRNA dihydrouridine synthase activity Molecular Function
GO:0050660 flavin adenine dinucleotide binding Molecular Function
GO:0102265 tRNA-dihydrouridine47 synthase activity Molecular Function
GO:0106414 mRNA dihydrouridine synthase activity Molecular Function
KEGG gene cross-reference
ath:AT4G38890
dosa:Os04g0117600
hsa:56931
xla:379349
xtr:394959
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.688
Rank 1 · TkA05G081920 · TK1151
Cytoplasm0.342
Rank 2 · TkA05G081920 · TK1151
Mitochondrion0.084
Rank 3 · TkA05G081920 · TK1151
Cell membrane0.035
Rank 4 · TkA05G081920 · TK1151
Endoplasmic reticulum0.023
Rank 5 · TkA05G081920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04419SERF-like_N85-97 aa
PF06733DEAD_292-154 aa
PF00642zf-CCCH100-126 aa
PF25585zf-CCCH_DUS3L101-133 aa
PF18044zf-CCCH_4102-126 aa
PF25261zf-CCCH_PARP12108-128 aa
PF18345zf_CCCH_4114-125 aa
PF14608zf-CCCH_2114-125 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G081920PF04419SERF-like_N85971.210.8
TkA05G081920PF06733DEAD_2921540.1412.5
TkA05G081920PF00642zf-CCCH1001266.7e-0523.4
TkA05G081920PF25585zf-CCCH_DUS3L1011333.3e-1659.6
TkA05G081920PF18044zf-CCCH_41021260.003717.7
TkA05G081920PF25261zf-CCCH_PARP121081280.8810.5
TkA05G081920PF18345zf_CCCH_41141250.03514.9
TkA05G081920PF14608zf-CCCH_21141250.213.0
TkA05G081920PF25585zf-CCCH_DUS3L1351663.3e-1659.6
TkA05G081920PF25261zf-CCCH_PARP121381540.8810.5
TkA05G081920PF18345zf_CCCH_41391440.03514.9
TkA05G081920PF00642zf-CCCH1401446.7e-0523.4
TkA05G081920PF14608zf-CCCH_21421600.213.0
TkA05G081920PF00642zf-CCCH1481606.7e-0523.4
TkA05G081920PF18044zf-CCCH_41501610.003717.7
TkA05G081920PF18345zf_CCCH_41521610.03514.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9T0J6Arabidopsis thalianasp|Q9T0J6|DUS3L_ARATH tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like60.400%Swiss-ProtHigh
Q7XT07Oryza sativa subsp. japonicasp|Q7XT07|DUS3L_ORYSJ tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like59.100%Swiss-ProtHigh

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