TkA05G074180 | RubberDandelionOmics

Gene overview

TkA05G074180

Reference: TK1151 Chr: Chr05 Coordinates: 19760132-19760689 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

558 bp · TkA05G074180|TK1151|cDNA

ATGAAGAAAGAGACTCTGATGATCTTGATGCTATGCAGTGTTGTGATGTTAATCCCATTGGTTGAAAGCGTTTCTGAAGAGCCAGAAGGAGTGGAAAAATGGTTCAAAGATCTCCCACTCAAAAAACAAAAAGTGACAAAACTACATTTCTACTTTCACGACACCCTGGCGGGCCCGGGTCAAACCGGGTATCCGGTATTCTCGTCAAACATCACCTCCACCAGCATCTCCAATTTTGGTTTGGGCTTCATATTTGACAA...

CDS

Download CDS FASTA

558 bp · TkA05G074180|TK1151|CDS

ATGAAGAAAGAGACTCTGATGATCTTGATGCTATGCAGTGTTGTGATGTTAATCCCATTGGTTGAAAGCGTTTCTGAAGAGCCAGAAGGAGTGGAAAAATGGTTCAAAGATCTCCCACTCAAAAAACAAAAAGTGACAAAACTACATTTCTACTTTCACGACACCCTGGCGGGCCCGGGTCAAACCGGGTATCCGGTATTCTCGTCAAACATCACCTCCACCAGCATCTCCAATTTTGGTTTGGGCTTCATATTTGACAA...

Protein

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185 aa · TkA05G074180|TK1151|PROTEIN

MKKETLMILMLCSVVMLIPLVESVSEEPEGVEKWFKDLPLKKQKVTKLHFYFHDTLAGPGQTGYPVFSSNITSTSISNFGLGFIFDNPMTIGPDRQSMNIGRGQGLASSASLSETRFLMNLNFVFTQGKLNGSTLQVVGTNPNQNEVREMSVVGGTGVFRLASGIAAFRNETSSTLEYDIVVLHY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G074180`
TK1151 ID	TkA05G074180
OH-1004 ID	LXL04_019675
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 93.514 / OH-1004 27.814 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G074180

Location Chr05:19760132-19760689 (-)

Description Similar to DIR1: Dirigent protein 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g65870`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release
`At4g38700`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release
`At1g22900`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release
`At2g21100`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release
`At1g55210`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019675 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009699 phenylpropanoid biosynthetic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0048046 apoplast Cellular Component

KEGG gene cross-reference

ath:AT1G65870

ath:AT5G42500

ath:AT5G42510

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.358

Rank 1 · TkA05G074180 · TK1151

Lysosome / Vacuole0.226

Rank 2 · TkA05G074180 · TK1151

Endoplasmic reticulum0.217

Rank 3 · TkA05G074180 · TK1151

Cytoplasm0.110

Rank 4 · TkA05G074180 · TK1151

Cell membrane0.081

Rank 5 · TkA05G074180 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03018Dirigent45-182 aa

PF18678AOC_like141-179 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G074180	`PF03018`	Dirigent	45	182	1.2e-41	142.6
TkA05G074180	`PF18678`	AOC_like	141	179	0.25	11.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SS03`	Arabidopsis thaliana	sp\|Q9SS03\|DIR21_ARATH Dirigent protein 21	40.000%	Swiss-Prot	Medium
`F4JUF8`	Arabidopsis thaliana	sp\|F4JUF8\|DIR15_ARATH Dirigent protein 15	38.300%	Swiss-Prot	Medium
`Q67YM6`	Arabidopsis thaliana	sp\|Q67YM6\|DIR11_ARATH Dirigent protein 11	40.500%	Swiss-Prot	Medium
`Q84TH6`	Arabidopsis thaliana	sp\|Q84TH6\|DIR23_ARATH Dirigent protein 23	35.600%	Swiss-Prot	Medium
`Q9C891`	Arabidopsis thaliana	sp\|Q9C891\|DIR20_ARATH Dirigent protein 20	39.100%	Swiss-Prot	Medium

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