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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G074030
Reference: TK1151 Chr: Chr05 Coordinates: 19715278-19717457 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2002 bp · TkA05G074030|TK1151|cDNA

AAAAAAAAACACTTTGGTCAGATTCGGGACAATAGTGACGTGGCCAAATGCAAATTTCCAATTCGGAGGGATCGCCGCTGCGCTCTAACCCGCTTCATTTGTAGTCTCGTAAAACCATTATCACCGGCGGCGCTAGGCGGAACTAAAACCTCCCACCACCATCTATTACCAGTTATTACTACGAAACAAGCAAAACCAACAAAAACCCGGATGAAGTTTACAAGGAACAAGAGAACATCCTTCTCCTAACATGGTGTCTT...

CDS

Download CDS FASTA

1398 bp · TkA05G074030|TK1151|CDS

ATGTCAGTTACGGGTCGGAAGAAGCCCGGAGAAGGATGTTTGTGTCATGAACACAATGGTCATCGGCTATGCACACAATGGGAATTACAACAAGGCATTAAATCTCTACAAAGAGTTAAAAATGTCAAACATTCATCCAAACGACTTCAGTTTTCAGGACTCTTAACCATCTGCGTTCAAACAAAAGACCTAAAACTCACAAAACAAGTCCATCCTCAGGTACTCAATGCTGGTTTCTTATCAAACATAGTACTTTGCAG...

Protein

Download Protein FASTA

465 aa · TkA05G074030|TK1151|PROTEIN

MSVTGRKKPGEGCLCHEHNGHRLCTQWELQQGIKSLQRVKNVKHSSKRLQFSGLLTICVQTKDLKLTKQVHPQVLNAGFLSNIVLCSSLINSYSKCNEIHNARKLFDEMPKRDVLAWTTIVSGYAKSGDMKTASELFNNMPTKNPVSWTSLISGYSRNVFPHEALHLFTKMIQNKVTPNQFTFSSALCACSTLTSIKNGKQIHGFLIKSHLTPNTIVLSSLIDMYSKCGNLQLSQLVFNHVNDKHNTILWNTMISALSQH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G074030
TK1151 IDTkA05G074030
OH-1004 IDLXL04_019671
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)92.000
Protein coverage (%)TK1151 88.387 / OH-1004 71.503
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G074030
LocationChr05:19715278-19717457 (-)
DescriptionSimilar to PCMP-E48: Pentatricopeptide repeat-containing protein At2g21090
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g21090 Pentatricopeptide repeat-containing protein At2g21090. No verified direct reference in this release
At2g29760 Involved in RNA editing event in chloroplasts.
A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.2009 · DOI: 10.1105/tpc.109.071472
At4g13650 Pentatricopeptide repeat-containing protein At4g13650. No verified direct reference in this release
At3g46790 Required for the intergenic processing between chloroplast rsp7 and ndhB transcripts. No verified direct reference in this release
At3g13770 Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019671 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0010214 seed coat development Biological Process
GO:0140547 acquisition of seed longevity Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G21090
ath:AT2G22070
ath:AT4G02750
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.757
Rank 1 · TkA05G074030 · TK1151
Plastid0.113
Rank 2 · TkA05G074030 · TK1151
Nucleus0.044
Rank 3 · TkA05G074030 · TK1151
Cytoplasm0.035
Rank 4 · TkA05G074030 · TK1151
Cell membrane0.006
Rank 5 · TkA05G074030 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29978ATP18_TPR20-77 aa
PF23276TPR_2442-140 aa
PF13812PPR_351-84 aa
PF17177PPR_long51-115 aa
PF13812PPR_376-112 aa
PF24603TPR_3081-147 aa
PF13041PPR_282-114 aa
PF01335DED84-116 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G074030PF29978ATP18_TPR20770.003617.9
TkA05G074030PF23276TPR_24421407.9e-0936.2
TkA05G074030PF13812PPR_351841.4e-2486.7
TkA05G074030PF17177PPR_long511151.4e-1144.9
TkA05G074030PF13812PPR_3761121.4e-2486.7
TkA05G074030PF24603TPR_30811470.312.3
TkA05G074030PF13041PPR_2821142.6e-49165.8
TkA05G074030PF01335DED841160.03115.2
TkA05G074030PF01535PPR851139.3e-47154.8
TkA05G074030PF12854PPR_1871094.3e-31107.1
TkA05G074030PF29070MSC6_N871128.9e-1762.0
TkA05G074030PF13428TPR_14891090.008417.4
TkA05G074030PF22330Rib_mS39_PPR981260.003118.0
TkA05G074030PF20431E_motif991053e-1866.5
TkA05G074030PF13762MNE11021410.00119.8
TkA05G074030PF12854PPR_11121404.3e-31107.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SKQ4Arabidopsis thalianasp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g2109058.400%Swiss-ProtHigh
O82380Arabidopsis thalianasp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic45.600%Swiss-ProtMedium
Q9SVP7Arabidopsis thalianasp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g1365035.000%Swiss-ProtMedium
Q9STF3Arabidopsis thalianasp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein CRR2, chloroplastic33.900%Swiss-ProtMedium
Q9LIC3Arabidopsis thalianasp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial35.000%Swiss-ProtMedium

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