TkA05G071970 | RubberDandelionOmics

Gene overview

TkA05G071970

Reference: TK1151 Chr: Chr05 Coordinates: 19214570-19225384 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

801 bp · TkA05G071970|TK1151|cDNA

CTCCAATTACAATGGCATTTTACTGGTGATTTATTTATATAAACTCTATACACATGTACAATCTCAATATCACGCGTCATCGTTCTATTTTACCCTCCATTTTTTCACACGCTACCGCCACCGTAAACCACAAGCTTCCCTCCCGGACTATCGTCACCAGCTGCCGGCGGCATAAAACAACCACCACCATGGCTATGGCTTTTAAGATGGCAACTACAGGGATGTGGGTGGCGGATGAATGCAAGAACTCCTTCATGGAG...

CDS

Download CDS FASTA

567 bp · TkA05G071970|TK1151|CDS

ATGTACAATCTCAATATCACGCGTCATCGTTCTATTTTACCCTCCATTTTTTCACACGCTACCGCCACCGTAAACCACAAGCTTCCCTCCCGGACTATCGTCACCAGCTGCCGGCGGCATAAAACAACCACCACCATGGCTATGGCTTTTAAGATGGCAACTACAGGGATGTGGGTGGCGGATGAATGCAAGAACTCCTTCATGGAGATGAAATGGAAGAAGGTTCATAGATATATAGTTTTTAAAATCGACGAGAAATC...

Protein

Download Protein FASTA

188 aa · TkA05G071970|TK1151|PROTEIN

MYNLNITRHRSILPSIFSHATATVNHKLPSRTIVTSCRRHKTTTTMAMAFKMATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAAEGYSDLTASLPDDDCRYAVFDFDFVTVDNCRKSKIFFIAWAPSASKIRAKMLYATSKDGLRRVLDGIHYEVQATDPSEMGFDIIQDRAK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G071970`
TK1151 ID	TkA05G071970
OH-1004 ID	LXL04_036874
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	62.700
Protein coverage (%)	TK1151 71.277 / OH-1004 91.781 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G071970

Location Chr05:19214570-19225384 (-)

Description Similar to ADF6: Actin-depolymerizing factor 6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g16700`	Actin-depolymerizing protein.	Molecular identification and characterization of the Arabidopsis AtADF1, AtADFS and AtADF6 genes.2001 · DOI: 10.1023/a:1010687911374
`At4g34970`	Does not display typical F-actin depolymerizing activity.	ACTIN DEPOLYMERIZING FACTOR9 controls development and gene expression in Arabidopsis.2008 · DOI: 10.1007/s11103-008-9398-1 Arabidopsis actin-depolymerizing factors (ADFs) 1 and 9 display antagonist activities.2011 · DOI: 10.1016/j.febslet.2011.05.019
`At2g31200`	Actin-depolymerizing protein.	Molecular identification and characterization of the Arabidopsis AtADF1, AtADFS and AtADF6 genes.2001 · DOI: 10.1023/a:1010687911374

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0243100`	Actin-depolymerizing protein.	No verified direct reference in this release
`Os12g0628100`	Actin-depolymerizing protein.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036874 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0030042 actin filament depolymerization Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0015629 actin cytoskeleton Cellular Component

GO:0003779 actin binding Molecular Function

GO:0051015 actin filament binding Molecular Function

KEGG gene cross-reference

ath:AT1G01750

ath:AT2G31200

dosa:Os03g0780400

dosa:Os12g0628100

vvi:100232871

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.669

Rank 1 · TkA05G071970 · TK1151

Nucleus0.344

Rank 2 · TkA05G071970 · TK1151

Plastid0.073

Rank 3 · TkA05G071970 · TK1151

Mitochondrion0.068

Rank 4 · TkA05G071970 · TK1151

Endoplasmic reticulum0.056

Rank 5 · TkA05G071970 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03716WCCH36-47 aa

PF00241Cofilin_ADF57-187 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G071970	`PF03716`	WCCH	36	47	0.3	11.6
TkA05G071970	`PF00241`	Cofilin_ADF	57	187	3.1e-40	137.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZNT3`	Arabidopsis thaliana	sp\|Q9ZNT3\|ADF5_ARATH Actin-depolymerizing factor 5	86.000%	Swiss-Prot	High
`O49606`	Arabidopsis thaliana	sp\|O49606\|ADF9_ARATH Actin-depolymerizing factor 9	77.300%	Swiss-Prot	High
`Q9ZSK2`	Arabidopsis thaliana	sp\|Q9ZSK2\|ADF6_ARATH Actin-depolymerizing factor 6	64.000%	Swiss-Prot	Medium
`Q10P87`	Oryza sativa subsp. japonica	sp\|Q10P87\|ADF5_ORYSJ Actin-depolymerizing factor 5	75.500%	Swiss-Prot	High
`Q2QLT8`	Oryza sativa subsp. japonica	sp\|Q2QLT8\|ADF11_ORYSJ Actin-depolymerizing factor 11	60.000%	Swiss-Prot	High

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