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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G070870
Reference: TK1151 Chr: Chr05 Coordinates: 18933576-18938259 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3729 bp · TkA05G070870|TK1151|cDNA

GAAGAGAAATCCAACAAAAAGGCCGACACTGAAATACCCTGATACGGAAACAAAAACCAAAACGGCTTCAGCCGACTGAAGACAACGAAGCCACGCCAAACAGGAAAGCCGGCTAAATCTAAGCCGTCACTGAGTGGTCAACCAAAAGTCCAAAACTGATCAACGATATATTTACATTGGCCACCTACGCCACTTGGCCACTTGATTAAATCAACCAAAAATACTACTACTGTTCTTCAAGAGAGGAAGAGAGAAGATGG...

CDS

Download CDS FASTA

2958 bp · TkA05G070870|TK1151|CDS

ATGGCATACGCACATCTGCAGATGTTCATGAAGAAACTGAAGCAGCTGATAGACTGCAATGATAATCCAATCATAAGCAACCCATCAATTTTATGTGAAAGGCCTCAATTCCTACACCTCTATGAAGAGCTTGGCTCCTTGATGCATACCCTATTCATCAAAGAAGGCGATAACCTAGAAAACTTTGAAAATGTGAGAAATCAGAGGAAAATACTCAAAGCTGTAGCAGAAGAGGCAGAAGATATCGTCGATCTCTTTCT...

Protein

Download Protein FASTA

985 aa · TkA05G070870|TK1151|PROTEIN

MAYAHLQMFMKKLKQLIDCNDNPIISNPSILCERPQFLHLYEELGSLMHTLFIKEGDNLENFENVRNQRKILKAVAEEAEDIVDLFLSTVYFKKKGYFPRSDVFHPSLHLEVVVRSIKSIKMELMTMSMDSSRTTNRLQIQSPVRASTSRNSLGSKKLLEEIVVGLDPDVEIIRDKLVEDRKQLEVVSIVGMGGIGKTTLATKVFSDPYVVHHFYVRAWVTVSQTYEKRDLLIQILSSIGVQEEFENANEFRLRQLLHKS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G070870
TK1151 IDTkA05G070870
OH-1004 IDLXL04_019646
Relationship / confidenceMulti Candidate From Tk1151 / Complex relationship
Protein identity (%)83.500
Protein coverage (%)TK1151 99.086 / OH-1004 98.141
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G070870
LocationChr05:18933576-18938259 (+)
DescriptionSimilar to R1A-6: Putative late blight resistance protein homolog R1A-6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019646 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009626 plant-type hypersensitive response Biological Process
GO:0051607 defense response to virus Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0016020 membrane Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0043531 ADP binding Molecular Function
GO:0046872 metal ion binding Molecular Function
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.431
Rank 1 · TkA05G070870 · TK1151
Cytoplasm0.336
Rank 2 · TkA05G070870 · TK1151
Nucleus0.214
Rank 3 · TkA05G070870 · TK1151
Endoplasmic reticulum0.073
Rank 4 · TkA05G070870 · TK1151
Plastid0.051
Rank 5 · TkA05G070870 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12799LRR_417-31 aa
PF13191AAA_16164-273 aa
PF00931NB-ARC169-338 aa
PF25201nSTAND6176-256 aa
PF20720nSTAND3182-204 aa
PF13173AAA_14185-298 aa
PF13401AAA_22186-273 aa
PF13671AAA_33186-286 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G070870PF12799LRR_417310.6911.0
TkA05G070870PF13191AAA_161642730.001320.0
TkA05G070870PF00931NB-ARC1693381.7e-45155.5
TkA05G070870PF25201nSTAND61762560.004217.9
TkA05G070870PF20720nSTAND31822040.1912.1
TkA05G070870PF13173AAA_141852980.02815.1
TkA05G070870PF13401AAA_221862733.4e-0628.1
TkA05G070870PF13671AAA_331862860.05614.5
TkA05G070870PF00448SRP541862040.1712.2
TkA05G070870PF00448SRP542582850.1712.2
TkA05G070870PF20720nSTAND32702930.1912.1
TkA05G070870PF23559WHD_DRP3273353e-2588.8
TkA05G070870PF23559WHD_DRP4214903e-2588.8
TkA05G070870PF25201nSTAND64604820.004217.9
TkA05G070870PF23559WHD_DRP5575923e-2588.8
TkA05G070870PF23598LRR_146789305.3e-1452.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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