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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G069250
Reference: TK1151 Chr: Chr05 Coordinates: 18531592-18534205 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2375 bp · TkA05G069250|TK1151|cDNA

AACCTACTAATAAAAAAGCGGAGCTGCTATCTCTCGTTCATAGTCATATCGCCGCACGCCGCTGCTTACCTTCTTCCTGGACAGCTCCTGCGGCTCCTCCATCGCTGCTTCTTTCCTGCACAGATAACGCCGGCGGCGCACACACATCTCAGTTTAGTTTAGTTTTCACACAACCCAACCATGGTGCAGTACAACTTCAAGAAGATCACTCGGGTCCCAACGGGAAAGGACTTTGTCGACATCGTCCTGAGCAGAACCCA...

CDS

Download CDS FASTA

2001 bp · TkA05G069250|TK1151|CDS

ATGGTGCAGTACAACTTCAAGAAGATCACTCGGGTCCCAACGGGAAAGGACTTTGTCGACATCGTCCTGAGCAGAACCCAAAGACAAACACCAACAGTCGTCCACAAAGGCTACGCGATAAACCGAATCCGGCAGTTCTATATGCGCAAGGTGAAGTTCACTCAAACAAATTTTCACGAAAAGCTCTCCACAATCATCGACGAGTTCCCTAGACTCGACGACATCCATCCTTTCTACGGCGACCTTCTCCACGTCCTCTA...

Protein

Download Protein FASTA

666 aa · TkA05G069250|TK1151|PROTEIN

MVQYNFKKITRVPTGKDFVDIVLSRTQRQTPTVVHKGYAINRIRQFYMRKVKFTQTNFHEKLSTIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLIGKIAKDYVKLLKYGDSLYRCKALKVAALGRMCTVTKRIGPSLAYLEQIRQHMARLPSIDPNTRTILICGYPNVGKSSFINKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRAAVLFFLDISGS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G069250
TK1151 IDTkA05G069250
OH-1004 IDLXL04_019616
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 91.989
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G069250
LocationChr05:18531592-18534205 (-)
DescriptionSimilar to At1g50920: Nucleolar GTP-binding protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g50920 Involved in the biogenesis of the 60S ribosomal subunit. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019616 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process
GO:0006364 rRNA processing Biological Process
GO:0008156 negative regulation of DNA replication Biological Process
GO:0008285 negative regulation of cell population proliferation Biological Process
GO:0010972 negative regulation of G2/M transition of mitotic cell cycle Biological Process
GO:0022408 negative regulation of cell-cell adhesion Biological Process
GO:0030336 negative regulation of cell migration Biological Process
GO:0031397 negative regulation of protein ubiquitination Biological Process
GO:0042254 ribosome biogenesis Biological Process
GO:0042273 ribosomal large subunit biogenesis Biological Process
GO:0050821 protein stabilization Biological Process
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT1G50920
ddi:DDB_G0285465
hsa:23560
mmu:69237
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.924
Rank 1 · TkA05G069250 · TK1151
Cytoplasm0.140
Rank 2 · TkA05G069250 · TK1151
Mitochondrion0.025
Rank 3 · TkA05G069250 · TK1151
Cell membrane0.017
Rank 4 · TkA05G069250 · TK1151
Endoplasmic reticulum0.007
Rank 5 · TkA05G069250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17835NOG1_N6-165 aa
PF13476AAA_23151-189 aa
PF03193RsgA_GTPase155-225 aa
PF00009GTP_EFTU167-191 aa
PF09439SRPRB168-294 aa
PF02421FeoB_N170-319 aa
PF04548AIG1170-282 aa
PF01926MMR_HSR1171-290 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G069250PF17835NOG1_N61658.2e-60202.3
TkA05G069250PF13476AAA_231511893.88.8
TkA05G069250PF03193RsgA_GTPase1552250.007216.9
TkA05G069250PF00009GTP_EFTU1671910.0001721.9
TkA05G069250PF09439SRPRB1682940.03814.1
TkA05G069250PF02421FeoB_N1703191.5e-1144.8
TkA05G069250PF04548AIG11702820.005116.9
TkA05G069250PF01926MMR_HSR11712901.1e-1868.2
TkA05G069250PF00350Dynamin_N1712000.0007920.2
TkA05G069250PF08477Roc1712920.03315.1
TkA05G069250PF13238AAA_181711910.09214.0
TkA05G069250PF13207AAA_171751900.1313.3
TkA05G069250PF00009GTP_EFTU2113480.0001721.9
TkA05G069250PF00350Dynamin_N2172580.0007920.2
TkA05G069250PF06858NOG12362921.2e-2486.5
TkA05G069250PF03193RsgA_GTPase2843170.007216.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C6I8Arabidopsis thalianasp|Q9C6I8|NOG1_ARATH Nucleolar GTP-binding protein 175.600%Swiss-ProtHigh

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