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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G057890
Reference: TK1151 Chr: Chr05 Coordinates: 15397867-15400327 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1683 bp · TkA05G057890|TK1151|cDNA

CTGAAAGTGGCATACGATAGAAGAACGAGCGAACAGTGAAAAGAAAAGCGGGGAGAGCCACAAAACCCTAGCAACAACAGCAATCTTCATCGCATTCAGATTCCCCATCCGAAAAACCATCGACTGAGCGCCACTGTCTATCTCCATACGTATCTAATCGAAGGGAAACCCAGAATACCTTCAAAATCAAATCATGGCGATGGCGAAATACGATCTGACACCTCGAATTGCTCCTAATCTCGACAGGCATCTGGTGTTTC...

CDS

Download CDS FASTA

1320 bp · TkA05G057890|TK1151|CDS

ATGGCGATGGCGAAATACGATCTGACACCTCGAATTGCTCCTAATCTCGACAGGCATCTGGTGTTTCCTCTGCTGGAATTCACTCAAGAGCGCGAGCTTTACCCTAACGATCAAATCCTCAAAGCCAAGATCGAGCTTTTGAACAACACTAATATGGTTGACTATGCCATGGATATCCACAAGTCTCTTTACCATACCGACGATGTTCCTCAAGATATGGTGGACAGGAGAGTAGAGGTAGTGGCAAGATTGAAGTCTTT...

Protein

Download Protein FASTA

439 aa · TkA05G057890|TK1151|PROTEIN

MAMAKYDLTPRIAPNLDRHLVFPLLEFTQERELYPNDQILKAKIELLNNTNMVDYAMDIHKSLYHTDDVPQDMVDRRVEVVARLKSLEEAAAPLVTFLQNPSAVQELRADKQYNLQMLNDRYQIGPEQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNAERSLSALWGKLAAEILMQNWEIALEELNRLKEIIDSKNFASSLNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTNAPHLLRYLATAF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G057890
TK1151 IDTkA05G057890
OH-1004 IDLXL04_019520
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G057890
LocationChr05:15397867-15400327 (+)
DescriptionSimilar to TIF3E1: Eukaryotic translation initiation factor 3 subunit E
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g57290 Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.
Arabidopsis eIF3e is regulated by the COP9 signalosome and has an impact on development and protein translation.2008 · DOI: 10.1111/j.1365-313x.2007.03347.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019520 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Biological Process
GO:0001732 formation of cytoplasmic translation initiation complex Biological Process
GO:0006352 DNA-templated transcription initiation Biological Process
GO:0006412 translation Biological Process
GO:0006413 translational initiation Biological Process
GO:0006874 intracellular calcium ion homeostasis Biological Process
GO:0009640 photomorphogenesis Biological Process
GO:0009908 flower development Biological Process
GO:0045727 positive regulation of translation Biological Process
GO:0090316 positive regulation of intracellular protein transport Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
KEGG gene cross-reference
ath:AT3G57290
bta:534165
nve:5516169
pon:100173055
rno:299872
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.636
Rank 1 · TkA05G057890 · TK1151
Nucleus0.438
Rank 2 · TkA05G057890 · TK1151
Lysosome / Vacuole0.073
Rank 3 · TkA05G057890 · TK1151
Golgi apparatus0.069
Rank 4 · TkA05G057890 · TK1151
Endoplasmic reticulum0.063
Rank 5 · TkA05G057890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09440eIF3_N7-139 aa
PF10075CSN8_PSD8_EIF3K21-41 aa
PF29751DDB_G0287209_Ig-like44-91 aa
PF13428TPR_1479-92 aa
PF13371TPR_982-100 aa
PF13371TPR_9118-163 aa
PF14559TPR_19121-152 aa
PF10602RPN7127-200 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G057890PF09440eIF3_N71395.2e-51173.2
TkA05G057890PF10075CSN8_PSD8_EIF3K21410.1312.9
TkA05G057890PF29751DDB_G0287209_Ig-like44910.2912.3
TkA05G057890PF13428TPR_1479920.3612.4
TkA05G057890PF13371TPR_9821000.01615.9
TkA05G057890PF13371TPR_91181630.01615.9
TkA05G057890PF14559TPR_191211520.1113.5
TkA05G057890PF10602RPN71272000.000321.2
TkA05G057890PF13428TPR_141301640.3612.4
TkA05G057890PF10075CSN8_PSD8_EIF3K1572350.1312.9
TkA05G057890PF13428TPR_141691920.3612.4
TkA05G057890PF14559TPR_191761930.1113.5
TkA05G057890PF13371TPR_91801910.01615.9
TkA05G057890PF29751DDB_G0287209_Ig-like2273010.2912.3
TkA05G057890PF21357EIF3E_C2292326.5e-0832.7
TkA05G057890PF09440eIF3_N2302635.2e-51173.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C5Z3Arabidopsis thalianasp|Q9C5Z3|EIF3E_ARATH Eukaryotic translation initiation factor 3 subunit E84.800%Swiss-ProtHigh

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