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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G055890
Reference: TK1151 Chr: Chr05 Coordinates: 14842341-14849523 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3545 bp · TkA05G055890|TK1151|cDNA

GTTGGGTTGACCATTTGGAAATTTCACTAAAATGTTTTAAACCATAACTTAATGTAGCATTTGATCCAAACTCACACCTCCCTCCCCGCCACTCACCAGCAACACACACAATGGCCCTGAAACTGTTAGCGAATCCACTTCATTCATCTTCTTCTCAATCTCAATCACAGTTCAAGAGCTTGTTAGCGAGCTCAAGATCCTTCTGTCAGCCTAGTTTTCATCTCCAATGGCGGTCGAAAGTGGTTGTACTCTCGCGCAGT...

CDS

Download CDS FASTA

3273 bp · TkA05G055890|TK1151|CDS

ATGGCCCTGAAACTGTTAGCGAATCCACTTCATTCATCTTCTTCTCAATCTCAATCACAGTTCAAGAGCTTGTTAGCGAGCTCAAGATCCTTCTGTCAGCCTAGTTTTCATCTCCAATGGCGGTCGAAAGTGGTTGTACTCTCGCGCAGTGGAACCAGCAGTTCGGGATTGATGGTGAGGGCGTGTGTAAAGGAAGATGCGAATGTGGCGGAAAAGGGGAAAACTGATTGGGGAAAAGTATCAGCGGTTCTGTTTGACAT...

Protein

Download Protein FASTA

1090 aa · TkA05G055890|TK1151|PROTEIN

MALKLLANPLHSSSSQSQSQFKSLLASSRSFCQPSFHLQWRSKVVVLSRSGTSSSGLMVRACVKEDANVAEKGKTDWGKVSAVLFDMDGVLCNSEEASRLAAVDVFAEMGVQVTVEDFVPFMGTGEANFLGGVASVKGVANFNPEAAKKRFFEIYLDKYAKPNSGIGFPGALELISECKINGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLSASKTLNVPPSECIVIEDALAGVQAAKAAK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G055890
TK1151 IDTkA05G055890
OH-1004 IDLXL04_019486
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G055890
LocationChr05:14842341-14849523 (+)
DescriptionSimilar to SOQ1: Protein SUPPRESSOR OF QUENCHING 1, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g56500 Required to maintain light harvesting efficiency, especially during nonphotochemical quenching (NPQ) recovery, via the regulation of chlorophyll excited-state lifetime probably by preventing the formation of a slowly reversible form of antenna quenching.
A thioredoxin-like/β-propeller protein maintains the efficiency of light harvesting in Arabidopsis.2013 · DOI: 10.1073/pnas.1305443110

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019486 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0010196 nonphotochemical quenching Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009534 chloroplast thylakoid Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0042651 thylakoid membrane Cellular Component
GO:0016787 hydrolase activity Molecular Function
GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G56500
bta:534327
gga:423903
hsa:374354
mmu:66866
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.957
Rank 1 · TkA05G055890 · TK1151
Mitochondrion0.032
Rank 2 · TkA05G055890 · TK1151
Cytoplasm0.031
Rank 3 · TkA05G055890 · TK1151
Cell membrane0.028
Rank 4 · TkA05G055890 · TK1151
Peroxisome0.025
Rank 5 · TkA05G055890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00702Hydrolase81-259 aa
PF13419HAD_283-266 aa
PF13242Hydrolase_like223-275 aa
PF01436NHL406-414 aa
PF08534Redoxin441-557 aa
PF00578AhpC-TSA445-549 aa
PF13098Thioredoxin_2452-567 aa
PF13905Thioredoxin_8453-547 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G055890PF00702Hydrolase812596.1e-2589.4
TkA05G055890PF13419HAD_2832665.3e-2692.4
TkA05G055890PF13242Hydrolase_like2232755.7e-0523.7
TkA05G055890PF01436NHL4064142.7e-31106.7
TkA05G055890PF08534Redoxin4415573.8e-0834.0
TkA05G055890PF00578AhpC-TSA4455492.3e-0628.3
TkA05G055890PF13098Thioredoxin_24525670.0009120.2
TkA05G055890PF13905Thioredoxin_84535472.4e-1660.6
TkA05G055890PF00085Thioredoxin4544930.003118.2
TkA05G055890PF00085Thioredoxin5295650.003118.2
TkA05G055890PF08450SGL5936311.4e-0732.2
TkA05G055890PF01436NHL6016272.7e-31106.7
TkA05G055890PF22494choice_anch_I6036460.1312.1
TkA05G055890PF25021TEN_NHL6078631.2e-0731.8
TkA05G055890PF17170DUF51286096430.008216.0
TkA05G055890PF16288DUF49346126850.06413.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8VZ10Arabidopsis thalianasp|Q8VZ10|SOQ1_ARATH Protein SUPPRESSOR OF QUENCHING 1, chloroplastic70.200%Swiss-ProtHigh

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