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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G055780
Reference: TK1151 Chr: Chr05 Coordinates: 14815196-14815684 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

489 bp · TkA05G055780|TK1151|cDNA

ATGATCAAGAAAATGACTAAAGGCAAGCAAAAGATTGACATAAAGAAGAAAGAAGAAACCAACAGGCGTCAAGACTTGACTGGAGCCCAAATCGCCATCCAGGTTACTTCCCCAGGTGGTGGTCAGGTCTATGCGTTTCCCCACTCCAACAACGACGTCCTGTTTGACAGCTCTCTGAATAATAACAACAAAGACGCCACCACCAACAACAACACCGGAGCAGAGATGAAGCGGAAAGAGACGATTTCGGTGAGCAGCGG...

CDS

Download CDS FASTA

489 bp · TkA05G055780|TK1151|CDS

ATGATCAAGAAAATGACTAAAGGCAAGCAAAAGATTGACATAAAGAAGAAAGAAGAAACCAACAGGCGTCAAGACTTGACTGGAGCCCAAATCGCCATCCAGGTTACTTCCCCAGGTGGTGGTCAGGTCTATGCGTTTCCCCACTCCAACAACGACGTCCTGTTTGACAGCTCTCTGAATAATAACAACAAAGACGCCACCACCAACAACAACACCGGAGCAGAGATGAAGCGGAAAGAGACGATTTCGGTGAGCAGCGG...

Protein

Download Protein FASTA

162 aa · TkA05G055780|TK1151|PROTEIN

MIKKMTKGKQKIDIKKKEETNRRQDLTGAQIAIQVTSPGGGQVYAFPHSNNDVLFDSSLNNNNKDATTNNNTGAEMKRKETISVSSGGLRWYDEPVDGMDVEELELYLCSLEELKNKVLTRADELMMINSNKNNIIQPEEISTNTAVDGGLNFKHGEDFGNL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G055780
TK1151 IDTkA05G055780
OH-1004 IDLXL04_019485
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)79.100
Protein coverage (%)TK1151 99.383 / OH-1004 94.089
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G055780
LocationChr05:14815196-14815684 (-)
DescriptionSimilar to AGL62: Agamous-like MADS-box protein AGL62
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019485 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0009559 embryo sac central cell differentiation Biological Process
GO:0009960 endosperm development Biological Process
GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process
GO:2000012 regulation of auxin polar transport Biological Process
GO:0005634 nucleus Cellular Component
GO:0043078 polar nucleus Cellular Component
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Molecular Function
GO:0003700 DNA-binding transcription factor activity Molecular Function
GO:0046983 protein dimerization activity Molecular Function
KEGG gene cross-reference
ath:AT2G24840
ath:AT5G60440
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.972
Rank 1 · TkA05G055780 · TK1151
Cytoplasm0.085
Rank 2 · TkA05G055780 · TK1151
Cell membrane0.029
Rank 3 · TkA05G055780 · TK1151
Endoplasmic reticulum0.018
Rank 4 · TkA05G055780 · TK1151
Plastid0.013
Rank 5 · TkA05G055780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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