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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G050660
Reference: TK1151 Chr: Chr05 Coordinates: 13491384-13495772 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1716 bp · TkA05G050660|TK1151|cDNA

GGTTTCTAAAACCTTAACTGAACCTGATCAATTAACAAAAACCCTAGCACTCCAAAACATTGGCCCACATCTTCTCTTCACGCCTTCACGACCTCCATCGCTGCTTCTTCCTCGGTGGTTCACGCCTGGTTCATTGTTGCTCTGATTCTTCCGATGCTTAACAAAGAACATGAGAAAGCCGAAGATGCAAAGCCAACAGCAGCTCCACCAGTTGTTGGGAGCTATTTTAATGGACAATATGTTGGATTCAAATCTATTTC...

CDS

Download CDS FASTA

1071 bp · TkA05G050660|TK1151|CDS

ATGGAGATTAATTTGAAGAATATAGCATTCGACCTTGATTTTCATCCTTCAAATCAGCTAGTTGCTGCTGGTTTAATCACTGGCAACCTTTTTGTATATCGATATGCTGAAGATTCTGAACCAAAAAGGGTGTTGAAGGTTCGTGCTCATGGTGAATCTTGTAGAGCTGCTAGATTCATCAATGAAGGACGTGTAATTCTCACGGGGTCTCCAGACTGTTCAATCCTGGCCACTGATATTGAAACAGGATCTCCAGTTGC...

Protein

Download Protein FASTA

356 aa · TkA05G050660|TK1151|PROTEIN

MEINLKNIAFDLDFHPSNQLVAAGLITGNLFVYRYAEDSEPKRVLKVRAHGESCRAARFINEGRVILTGSPDCSILATDIETGSPVARLENCHEKAVNRLVNLTETTVASGGDEGCIKVWDTRQQTCCNTFQVHEEYITDMTLEPDSMKLLGTSGDGTLSVCNLRSNKVQTQSEFSEDEPLSIVIMKNGRKVICGTESGTMLLYSWGFFKDCSDRFTGLSPNPVNTLLKLDEERVITGTENGLISLVGILPNRIIQPIAE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G050660
TK1151 IDTkA05G050660
OH-1004 IDLXL04_019422
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G050660
LocationChr05:13491384-13495772 (+)
DescriptionSimilar to WDR55: WD repeat-containing protein 55
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g34260 Required for male and female gametogenesis, seed development, and embryo and endosperm development at early stages.
Arabidopsis WD repeat domain55 Interacts with DNA damaged binding protein1 and is required for apical patterning in the embryo.2012 · DOI: 10.1105/tpc.111.089425
The Arabidopsis DDB1 interacting protein WDR55 is required for vegetative development.2013 · DOI: 10.4161/psb.25347

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019422 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006364 rRNA processing Biological Process
GO:0009553 embryo sac development Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0009855 determination of bilateral symmetry Biological Process
GO:0009960 endosperm development Biological Process
GO:0010197 polar nucleus fusion Biological Process
GO:0080186 developmental vegetative growth Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005730 nucleolus Cellular Component
GO:0005737 cytoplasm Cellular Component
KEGG gene cross-reference
ath:AT2G34260
bta:508709
ddi:DDB_G0282573
hsa:54853
rno:307494
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.888
Rank 1 · TkA05G050660 · TK1151
Cytoplasm0.204
Rank 2 · TkA05G050660 · TK1151
Mitochondrion0.024
Rank 3 · TkA05G050660 · TK1151
Cell membrane0.022
Rank 4 · TkA05G050660 · TK1151
Endoplasmic reticulum0.013
Rank 5 · TkA05G050660 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24796WDR552-295 aa
PF23409Beta-prop_EML9-116 aa
PF25174Beta-prop_THOC311-94 aa
PF23381Beta-prop_IFT122_1st11-100 aa
PF00400WD4011-24 aa
PF23414Beta-prop_EML_211-92 aa
PF17005WD40_like11-143 aa
PF25173Beta-prop_WDR3_1st12-161 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G050660PF24796WDR5522958.4e-96321.2
TkA05G050660PF23409Beta-prop_EML91161.2e-1455.2
TkA05G050660PF25174Beta-prop_THOC311945.6e-29101.7
TkA05G050660PF23381Beta-prop_IFT122_1st111002.4e-2280.3
TkA05G050660PF00400WD4011241.7e-2073.3
TkA05G050660PF23414Beta-prop_EML_211922.4e-1763.9
TkA05G050660PF17005WD40_like111430.003517.5
TkA05G050660PF25173Beta-prop_WDR3_1st121613.5e-2899.3
TkA05G050660PF25175Beta-prop_WDR5122621.7e-2487.4
TkA05G050660PF24814WD40_Prp1912373.2e-2073.1
TkA05G050660PF24807WD40_CDC20-Fz121695.8e-2072.5
TkA05G050660PF25172Beta-prop_WDR3_2nd12811.6e-1764.4
TkA05G050660PF23393Beta-prop_WDR90_POC16_2nd12344.2e-0936.8
TkA05G050660PF23869Beta-prop_WDR75_1st12710.0004320.4
TkA05G050660PF23410Beta-prop_VPS812670.01315.2
TkA05G050660PF23383Beta-prop_IFT140_1st12690.01814.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O80775Arabidopsis thalianasp|O80775|WDR55_ARATH WD repeat-containing protein 5566.700%Swiss-ProtHigh

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