TkA05G049160 | RubberDandelionOmics

Gene overview

TkA05G049160

Reference: TK1151 Chr: Chr05 Coordinates: 12954128-12958152 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1753 bp · TkA05G049160|TK1151|cDNA

AAGAGAGAAAGAATAATTGAGACTGAAAAGGGAAAAGAAAAAAAGAAGAAAACAAAGAAGAAAAAAAGAGTGAAATGTGGAGAGAGCCTTGTATGGAAGGCCACACAGAAATACTATAACAATCAACTATCTCCATCTCTCTCTCTCTTCTTCCCAAAATCAACTTTTTTCCCAAATTTTCTCAAACATTTGGACGCATTCCTCTCAAATTTATCCTGACAAACATAAAGGAACTTCAAATTCTTTGAATCGTTTATTCG...

CDS

Download CDS FASTA

1317 bp · TkA05G049160|TK1151|CDS

ATGTCCTGTTCATCGTCATCTGGGTCGGAGGAGGAAGATGAGGACATGGATTCGTACAGGAAAGGAGGCTACCACGCGGTTAGAGTAGGCGATACGTTCGCCGGCGGTCGGTACGTCGCTCAACGGAAGCTCGGATGGGGACAGTTTTCCACCGTTTGGCTTGCGTATGATACCCAAACATCTAAATACGTTGCACTGAAGATCCAAAAAAGCGCACCCGAATTCGCCCAATCCGCCCTCCACGAAATCGAAGTCCTATC...

Protein

Download Protein FASTA

438 aa · TkA05G049160|TK1151|PROTEIN

MSCSSSSGSEEEDEDMDSYRKGGYHAVRVGDTFAGGRYVAQRKLGWGQFSTVWLAYDTQTSKYVALKIQKSAPEFAQSALHEIEVLSTLTKNDPENKKCVIRLVDHFKHTGPNGQHLCMVLEFLGDSILQLIRYNRYKGLPLTKVREICKCILTALDYIHRDLNILHTDLKPENILLISTINPSKDPIKSNTEPVLNKPEGNMNGGGAVVSMIEKKLKQRAKRAVARISARRISMGGVKVEKAERCVDGIDFRCKVVDFG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G049160`
TK1151 ID	TkA05G049160
OH-1004 ID	LXL04_019399
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA05G049160`
Location	Chr05:12954128-12958152 (-)
Description	Similar to Serine/threonine-protein kinase SRPK
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_019399` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000245 spliceosomal complex assembly Biological Process GO:0006468 protein phosphorylation Biological Process GO:0007059 chromosome segregation Biological Process GO:0008380 RNA splicing Biological Process GO:0030154 cell differentiation Biological Process GO:0035092 sperm DNA condensation Biological Process GO:0035556 intracellular signal transduction Biological Process GO:0045070 positive regulation of viral genome replication Biological Process GO:0045071 negative regulation of viral genome replication Biological Process GO:0045087 innate immune response Biological Process GO:0048024 regulation of mRNA splicing, via spliceosome Biological Process GO:0050684 regulation of mRNA processing Biological Process
KEGG gene cross-reference	hsa:6732 pon:100172042 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.552

Rank 1 · TkA05G049160 · TK1151

Cytoplasm0.489

Rank 2 · TkA05G049160 · TK1151

Mitochondrion0.078

Rank 3 · TkA05G049160 · TK1151

Cell membrane0.062

Rank 4 · TkA05G049160 · TK1151

Endoplasmic reticulum0.035

Rank 5 · TkA05G049160 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase38-178 aa

PF07714PK_Tyr_Ser-Thr41-178 aa

PF02613Nitrate_red_del116-130 aa

PF07714PK_Tyr_Ser-Thr253-312 aa

PF00069Pkinase254-414 aa

PF02613Nitrate_red_del318-338 aa

PF07714PK_Tyr_Ser-Thr381-410 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G049160	`PF00069`	Pkinase	38	178	2.9e-44	152.2
TkA05G049160	`PF07714`	PK_Tyr_Ser-Thr	41	178	4.3e-15	56.4
TkA05G049160	`PF02613`	Nitrate_red_del	116	130	0.25	12.1
TkA05G049160	`PF07714`	PK_Tyr_Ser-Thr	253	312	4.3e-15	56.4
TkA05G049160	`PF00069`	Pkinase	254	414	2.9e-44	152.2
TkA05G049160	`PF02613`	Nitrate_red_del	318	338	0.25	12.1
TkA05G049160	`PF07714`	PK_Tyr_Ser-Thr	381	410	4.3e-15	56.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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