TkA05G048860 | RubberDandelionOmics

Gene overview

TkA05G048860

Reference: TK1151 Chr: Chr05 Coordinates: 12866346-12868138 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1680 bp · TkA05G048860|TK1151|cDNA

CAAAGATATGGCCCCCTTCGATATCCTTCACTAATTTTTCTATGTGTCTGTCTATTTAAGGGATAATTTTATTGTGAACAGAGTAAGTGGCCTCTCTTCTTCACAATTGATTTCCATCGCTAACATAAATTTAAAATCACTGTAAGTTTACAACTCTCCATACTCTGTTTTCATTTCTTGCTCATACGACATGAAACAGAGAGTTAATTGTGGGACGATCACAACTTAATTTTGTATGATTCTGGCCTCTGATTGAGCTC...

CDS

Download CDS FASTA

846 bp · TkA05G048860|TK1151|CDS

ATGATCAGTGATCATACCAGAAAAATGGAAGAAGAAAAAAGATCCGGCGTCGTAAGCAGGTTCTTAGGAGAACTAAACATCACCGTGAGACGATTCCTGTTTCGAGTCATGTCATCTGGTCCAATCCCACAACACATCGCCTTCATCATGGATGGAAACCGAAGGTTTGCGAAAAAATGGAAGCTCGAAGAAGGTGCAGGCCATAAAGCGGGATTCCTAGCCCTCATGTCGTTGCTAAAATACTGCTATGAGATGGGAGT...

Protein

Download Protein FASTA

281 aa · TkA05G048860|TK1151|PROTEIN

MISDHTRKMEEEKRSGVVSRFLGELNITVRRFLFRVMSSGPIPQHIAFIMDGNRRFAKKWKLEEGAGHKAGFLALMSLLKYCYEMGVKYVTVYAFSLDNFNRRPDEVQYVMDLMHEKIEGFLKELDMVNRYGIRVLFIGDLNRLYAPVRVAAEKAMEATAKNTKTYLLVCVAYTSSHEIPRAVYEACQERSGRKDGKEEEELIKVVDLEKKMYMGVVPDPDILVRSSGETRLSNFLLWQTSNSLLYSPKALWPEMGLRHV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G048860`
TK1151 ID	TkA05G048860
OH-1004 ID	LXL04_019393
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G048860

Location Chr05:12866346-12868138 (+)

Description Similar to At2g17570: Dehydrodolichyl diphosphate synthase 6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g17570`	Catalyzes cis-prenyl chain elongation to produce the polyprenyl backbone of dolichol, a glycosyl carrier-lipid required for the biosynthesis of several classes of glycoprotein.	No verified direct reference in this release
`At5g60510`	Catalyzes cis-prenyl chain elongation to produce the polyprenyl backbone of dolichol, a glycosyl carrier-lipid required for the biosynthesis of several classes of glycoprotein.	No verified direct reference in this release
`At5g60500`	Catalyzes cis-prenyl chain elongation to produce the polyprenyl backbone of dolichol, a glycosyl carrier-lipid required for the biosynthesis of several classes of glycoprotein.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019393 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016094 polyprenol biosynthetic process Biological Process

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005829 cytosol Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0004659 prenyltransferase activity Molecular Function

GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups Molecular Function

GO:0045547 ditrans,polycis-polyprenyl diphosphate synthase [(2E,6E)-farnesyl diphosphate specific] activity Molecular Function

GO:0050267 rubber cis-polyprenylcistransferase activity Molecular Function

KEGG gene cross-reference

ath:AT2G17570

ath:AT5G60500

ath:AT5G60510

sly:101253666

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.548

Rank 1 · TkA05G048860 · TK1151

Mitochondrion0.180

Rank 2 · TkA05G048860 · TK1151

Cytoplasm0.143

Rank 3 · TkA05G048860 · TK1151

Nucleus0.096

Rank 4 · TkA05G048860 · TK1151

Cell membrane0.072

Rank 5 · TkA05G048860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01255Prenyltransf49-273 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G048860	`PF01255`	Prenyltransf	49	273	2.5e-66	224.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8S2T1`	Arabidopsis thaliana	sp\|Q8S2T1\|DDPS6_ARATH Dehydrodolichyl diphosphate synthase 6	56.700%	Swiss-Prot	High
`Q8LAR7`	Arabidopsis thaliana	sp\|Q8LAR7\|DDPS8_ARATH Dehydrodolichyl diphosphate synthase 8	50.200%	Swiss-Prot	High
`Q8LED0`	Arabidopsis thaliana	sp\|Q8LED0\|DDPS7_ARATH Dehydrodolichyl diphosphate synthase 7	50.000%	Swiss-Prot	High

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