TkA05G038500 | RubberDandelionOmics

Gene overview

TkA05G038500

Reference: TK1151 Chr: Chr05 Coordinates: 10418203-10419156 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

785 bp · TkA05G038500|TK1151|cDNA

CAAAACTCAAACCTTAAAAAGTATATTAGAACCCACTATCTCTATCCATGTTGCATGTCACACCCACAAAAATGTCTTTGAAGCAGAATAGGAACCTAAGCCACGACATGAATATATCCACCACCCATGAATATTTCCACCACCAAACCTTCATAAAAGAACACATGTTTGAGAAACGCCTGACACCCAGCGACGTCGGAAAGCTTAACCGCCTCGTCATCCCCAAGCAATACGCCGAGAAGTACTTTCCGGTGGTCTCC...

CDS

Download CDS FASTA

612 bp · TkA05G038500|TK1151|CDS

ATGTTGCATGTCACACCCACAAAAATGTCTTTGAAGCAGAATAGGAACCTAAGCCACGACATGAATATATCCACCACCCATGAATATTTCCACCACCAAACCTTCATAAAAGAACACATGTTTGAGAAACGCCTGACACCCAGCGACGTCGGAAAGCTTAACCGCCTCGTCATCCCCAAGCAATACGCCGAGAAGTACTTTCCGGTGGTCTCCGGCAGCCTGGTTTTAAGCTTGGTGGACGAGTCCGGGAAGCACTGGAA...

Protein

Download Protein FASTA

203 aa · TkA05G038500|TK1151|PROTEIN

MLHVTPTKMSLKQNRNLSHDMNISTTHEYFHHQTFIKEHMFEKRLTPSDVGKLNRLVIPKQYAEKYFPVVSGSLVLSLVDESGKHWKFRYSYWNSSQSYVFTKGWSRFVKEKKLEAGDVVFFQRQVVDSSSVLFLGWRRRMNDGWLSSEKPEILKYKTVRLFGVNLECRTHEAQEEPPTPDHGCFTNNMEKEGILEMGPCANM

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G038500`
TK1151 ID	TkA05G038500
OH-1004 ID	LXL04_019291
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G038500

Location Chr05:10418203-10419156 (+)

Description Similar to ARF31: B3 domain-containing protein At2g36080

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g36080`	B3 domain-containing protein At2g36080.	No verified direct reference in this release
`At3g11580`	B3 domain-containing protein At3g11580.	No verified direct reference in this release
`At5g06250`	B3 domain-containing protein At5g06250.	No verified direct reference in this release
`At2g46870`	Regulates lateral organ growth.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os11g0156000`	B3 domain-containing protein Os11g0156000.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019291 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009908 flower development Biological Process

GO:0010073 meristem maintenance Biological Process

GO:0010358 leaf shaping Biological Process

GO:0019760 glucosinolate metabolic process Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0048366 leaf development Biological Process

GO:0048480 stigma development Biological Process

GO:0048507 meristem development Biological Process

GO:0080113 regulation of seed growth Biological Process

GO:1901371 regulation of leaf morphogenesis Biological Process

KEGG gene cross-reference

ath:AT2G36080

ath:AT2G46870

ath:AT3G11580

ath:AT5G06250

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.957

Rank 1 · TkA05G038500 · TK1151

Cytoplasm0.106

Rank 2 · TkA05G038500 · TK1151

Cell membrane0.028

Rank 3 · TkA05G038500 · TK1151

Endoplasmic reticulum0.017

Rank 4 · TkA05G038500 · TK1151

Mitochondrion0.010

Rank 5 · TkA05G038500 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03754At2g31720-like39-59 aa

PF02362B341-140 aa

PF03754At2g31720-like77-120 aa

PF31239At5g26805_C79-122 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G038500	`PF03754`	At2g31720-like	39	59	1.1e-05	26.0
TkA05G038500	`PF02362`	B3	41	140	3.3e-27	95.1
TkA05G038500	`PF03754`	At2g31720-like	77	120	1.1e-05	26.0
TkA05G038500	`PF31239`	At5g26805_C	79	122	3.5e-06	28.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GYJ2`	Arabidopsis thaliana	sp\|Q8GYJ2\|Y2608_ARATH B3 domain-containing protein At2g36080	50.000%	Swiss-Prot	High
`Q8RYD3`	Arabidopsis thaliana	sp\|Q8RYD3\|Y3158_ARATH B3 domain-containing protein At3g11580	43.600%	Swiss-Prot	Medium
`Q9FNI3`	Arabidopsis thaliana	sp\|Q9FNI3\|Y5625_ARATH B3 domain-containing protein At5g06250	47.800%	Swiss-Prot	Medium
`O82799`	Arabidopsis thaliana	sp\|O82799\|NGA1_ARATH B3 domain-containing transcription factor NGA1	68.200%	Swiss-Prot	Medium
`Q53QI0`	Oryza sativa subsp. japonica	sp\|Q53QI0\|Y1160_ORYSJ B3 domain-containing protein Os11g0156000	64.200%	Swiss-Prot	Medium

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