TkA05G030540 | RubberDandelionOmics

Gene overview

TkA05G030540

Reference: TK1151 Chr: Chr05 Coordinates: 8250390-8259126 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1601 bp · TkA05G030540|TK1151|cDNA

CATTATTGTGATTTCTCAACCCCTAGGAGCGCCTCTTTGATTTTTCAAAATTCCACCGATGGACGATGTTCTTCTTCTCCACAACAACACAACATGTACTCGATCTCTTATTTTACACACGTACTCGAGTTCTTCTTCAATCTCTATTTCGGTTGTTCTTTAAACTTCAATGTCACTCGTCCCTCTATCTCGAGTTGTTGCTTCACATAGGCTCTCGAGTTGTTTCAGCTCCTCAATCTCGAGTCGACAGAAACAGAGAA...

CDS

Download CDS FASTA

759 bp · TkA05G030540|TK1151|CDS

ATGGATCTATGCAAGAACATTAACCCCGATGAAGCTGTGGCTTATGGGGCGGCAGTTTTGGCTGCAAATTTAAGTGGTGAAAGTAGGAAAAGTTTAAATGAGTTTACGGTTTCGGATGTCACACCCTTGTCGCTTGGTATCGAGACAGAAGATGAGCTACTGTCTGTTGTTATCCCAAGGAACACTCCTGTACCTACAAAGAAGACTGCAATGTTTACTACAAGCGAAGACAACCAATCTGGTCTGCAATTGGCGGTGTA...

Protein

Download Protein FASTA

252 aa · TkA05G030540|TK1151|PROTEIN

MDLCKNINPDEAVAYGAAVLAANLSGESRKSLNEFTVSDVTPLSLGIETEDELLSVVIPRNTPVPTKKTAMFTTSEDNQSGLQLAVYQGERSKATDNYLLGSFRVSGIPPAPKEVQVIEDCFEIDENGILIVTAKVVSTGDTKSLMVTNLSGRLSKKEIEKMVKDAEKYKLEDQEYKRKAEAYNDLEDCIYHIKKKIKSNYMPPPMDLKKMHCIIDDTMKWLSNIKGATVEEIKRRKAHLESMSEFGLAFPD

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G030540`
TK1151 ID	TkA05G030540
OH-1004 ID	LXL04_019219
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	69.000
Protein coverage (%)	TK1151 99.603 / OH-1004 33.693 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G030540

Location Chr05:8250390-8259126 (+)

Description Similar to HSP70: Heat shock cognate 70 kDa protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g12580`	In cooperation with other chaperones, Hsp70s are key components that facilitate folding of de novo synthesized proteins, assist translocation of precursor proteins into organelles, and are responsible for degradation of damaged protein under stress conditions (Probable).	Comprehensive expression profile analysis of the Arabidopsis Hsp70 gene family.2001 · DOI: 10.1104/pp.126.2.789 Heat shock protein cognate 70-4 and an E3 ubiquitin ligase, CHIP, mediate plastid-destined precursor degradation through the ubiquitin-26S proteasome system in Arabidopsis.2009 · DOI: 10.1105/tpc.109.071548
`At1g16030`	In cooperation with other chaperones, Hsp70s are key components that facilitate folding of de novo synthesized proteins, assist translocation of precursor proteins into organelles, and are responsible for degradation of damaged protein under stress conditions.	No verified direct reference in this release
`At5g02490`	In cooperation with other chaperones, Hsp70s are key components that facilitate folding of de novo synthesized proteins, assist translocation of precursor proteins into organelles, and are responsible for degradation of damaged protein under stress conditions.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_019219 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006457 protein folding Biological Process

GO:0006950 response to stress Biological Process

GO:0009266 response to temperature stimulus Biological Process

GO:0009408 response to heat Biological Process

GO:0009615 response to virus Biological Process

GO:0009617 response to bacterium Biological Process

GO:0010187 negative regulation of seed germination Biological Process

GO:0010286 heat acclimation Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0042026 protein refolding Biological Process

GO:0042742 defense response to bacterium Biological Process

KEGG gene cross-reference

ath:AT3G12580

ath:AT5G02490

ath:AT5G02500

sly:101247772

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.610

Rank 1 · TkA05G030540 · TK1151

Nucleus0.345

Rank 2 · TkA05G030540 · TK1151

Cell membrane0.083

Rank 3 · TkA05G030540 · TK1151

Endoplasmic reticulum0.060

Rank 4 · TkA05G030540 · TK1151

Mitochondrion0.059

Rank 5 · TkA05G030540 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00012HSP702-244 aa

PF14235DUF4337156-187 aa

PF27267LdmS_N174-217 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G030540	`PF00012`	HSP70	2	244	1.5e-61	209.2
TkA05G030540	`PF14235`	DUF4337	156	187	0.47	11.3
TkA05G030540	`PF27267`	LdmS_N	174	217	0.25	11.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LHA8`	Arabidopsis thaliana	sp\|Q9LHA8\|HS704_ARATH Heat shock 70 kDa protein 4	49.800%	Swiss-Prot	Medium
`Q9S9N1`	Arabidopsis thaliana	sp\|Q9S9N1\|HSP7E_ARATH Heat shock 70 kDa protein 5	48.200%	Swiss-Prot	Medium
`P22954`	Arabidopsis thaliana	sp\|P22954\|HS702_ARATH Heat shock 70 kDa protein 2	47.800%	Swiss-Prot	Medium

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