TkA05G025110 | RubberDandelionOmics

Gene overview

TkA05G025110

Reference: TK1151 Chr: Chr05 Coordinates: 6803465-6805652 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1741 bp · TkA05G025110|TK1151|cDNA

AGAGAGAGAGAAGCGGAGAGAGAAAGAGAGAAAGATAAAGAGAGAGAGAAGGAAAAACATCTTTGTAAAAGATCAATCTACCTAGGGTTCAAAGTTGTTTCTAGCATGTTTATGACTTTATGTAAAGTATTATCAATGTATTTTTTGATCACTGTCTCATGATTATGGTTGTTTCCTAAAATGGAAAGAGATGGTAAAGCATTCAGAAGTAAACTCTAAGAATTCTGTGTTCAACGCTAGTAGGAAGAATATTACTTGTT...

CDS

Download CDS FASTA

1086 bp · TkA05G025110|TK1151|CDS

ATGGAGAAAAGTCAAGAAACCAAGTGTTCTAACACAAGTTCAGGTTCGTCGGAAGCGGAGGAAGAAAGCGAGTCAAAAGAAGTTGTGGAGTTGAAAGATGGAGGAAGTACTTCTAGCAATAGCACGATAGAGGAGAGTGATAAGAAGCCAGCTGTCCGTCCTTATGTCCGATCTAAGATGCCTAGACTCCGGTGGACCAATGATCTGCATCATCGTTTTGTTCAGGCGATCGAAAGGCTTGGTGGGCAAGATAGAGCGAC...

Protein

Download Protein FASTA

361 aa · TkA05G025110|TK1151|PROTEIN

MEKSQETKCSNTSSGSSEAEEESESKEVVELKDGGSTSSNSTIEESDKKPAVRPYVRSKMPRLRWTNDLHHRFVQAIERLGGQDRATPKLVLQLMNIKGLHIAHVKSHLQMYRSKKIEDPNQVADPSIEGGDRNIYNLSQLPMLQCYNRTYDSAFRYEDAQRYNRDWMHNALREHCSFQNTNKPRFYNMAADRILAINHVEHANRSLQSNHLPLNEQMTSLRNPEVNDNFGSRMLQGQYSKLPNPTVLKLNPLIKVQEHQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G025110`
TK1151 ID	TkA05G025110
OH-1004 ID	LXL04_019168
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.900
Protein coverage (%)	TK1151 98.892 / OH-1004 90.380 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G025110

Location Chr05:6803465-6805652 (-)

Description Similar to At1g14600: Putative Myb family transcription factor At1g14600

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g14600`	Putative transcription factor.	No verified direct reference in this release
`At5g42630`	Probable transcription factor that regulates carpel integuments formation.	ABERRANT TESTA SHAPE encodes a KANADI family member, linking polarity determination to separation and growth of Arabidopsis ovule integuments.2006 · DOI: 10.1111/j.1365-313x.2006.02717.x A new dominant Arabidopsis transparent testa mutant, sk21-D, and modulation of seed flavonoid biosynthesis by KAN4.2010 · DOI: 10.1111/j.1467-7652.2010.00525.x

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0566600`	Transcriptional repressor that plays a role in the regulation of organ identity and spikelet meristem determinacy.	MORE FLORET1 Encodes a MYB Transcription Factor That Regulates Spikelet Development in Rice.2020 · DOI: 10.1104/pp.20.00658
`Os06g0670300`	Probable transcription factor involved in the regulation of plant height by elongating internode cell length.	OsMPH1 regulates plant height and improves grain yield in rice.2017 · DOI: 10.1371/journal.pone.0180825 OsMYB45 plays an important role in rice resistance to cadmium stress.2017 · DOI: 10.1016/j.plantsci.2017.08.002
`Os09g0395300`	Probable transcription factor that regulates abaxial identity during leaf development.	SHALLOT-LIKE1 is a KANADI transcription factor that modulates rice leaf rolling by regulating leaf abaxial cell development.2009 · DOI: 10.1105/tpc.108.061457

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019168 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0010158 abaxial cell fate specification Biological Process

GO:0010229 inflorescence development Biological Process

GO:0010582 floral meristem determinacy Biological Process

GO:0010629 negative regulation of gene expression Biological Process

GO:0030154 cell differentiation Biological Process

GO:0048481 plant ovule development Biological Process

GO:0080060 integument development Biological Process

GO:0005634 nucleus Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

KEGG gene cross-reference

ath:AT1G14600

ath:AT5G42630

dosa:Os04g0566600

dosa:Os06g0670300

dosa:Os09g0395300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.980

Rank 1 · TkA05G025110 · TK1151

Cytoplasm0.082

Rank 2 · TkA05G025110 · TK1151

Cell membrane0.021

Rank 3 · TkA05G025110 · TK1151

Endoplasmic reticulum0.011

Rank 4 · TkA05G025110 · TK1151

Plastid0.009

Rank 5 · TkA05G025110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00249Myb_DNA-binding62-113 aa

PF29107C2orf92144-221 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G025110	`PF00249`	Myb_DNA-binding	62	113	4.7e-07	30.5
TkA05G025110	`PF29107`	C2orf92	144	221	0.11	13.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q700D9`	Arabidopsis thaliana	sp\|Q700D9\|MYBF_ARATH Putative Myb family transcription factor At1g14600	68.200%	Swiss-Prot	Low
`Q9FJV5`	Arabidopsis thaliana	sp\|Q9FJV5\|KAN4_ARATH Probable transcription factor KAN4	56.500%	Swiss-Prot	Low
`A3AWH5`	Oryza sativa subsp. japonica	sp\|A3AWH5\|MOF1_ORYSJ Myb family transcription factor MOF1	73.100%	Swiss-Prot	Low
`A0A0P0X0C0`	Oryza sativa subsp. japonica	sp\|A0A0P0X0C0\|MPH1_ORYSJ Myb family transcription factor MPH1	46.900%	Swiss-Prot	Low
`Q0J235`	Oryza sativa subsp. japonica	sp\|Q0J235\|ROLL9_ORYSJ Probable transcription factor RL9	57.700%	Swiss-Prot	Low

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