TkA05G024790 | RubberDandelionOmics

Gene overview

TkA05G024790

Reference: TK1151 Chr: Chr05 Coordinates: 6714565-6718620 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1919 bp · TkA05G024790|TK1151|cDNA

AAAGACTGCTGCTTCGTGGAAGGTTCCTAACTCTGAATTTTTTCTAATATATAAGAGTAAGTTGCTGTAAGTCGTAGATTCAAATTCCTTCATTAATTCTAGCTCCGTACTAGCACTTTGTTGAGTGATAGTTTTGTTATTCAAAAAAAATCTTATTATTTTTTCTATAACAACCACCAAAAGCAAATGGCTTCCACTGAACCATGGTTGCTTGAAAACGGCACAGTCAAGAGGTTAACCAAGGAGGCCAGGCATGGCCA...

CDS

Download CDS FASTA

1377 bp · TkA05G024790|TK1151|CDS

ATGGCTTCCACTGAACCATGGTTGCTTGAAAACGGCACAGTCAAGAGGTTAACCAAGGAGGCCAGGCATGGCCATGGTCATAGTCGGACTGCCCATAATATGTCATCAACCTCCCTTCGTAGAAAGTCCGATATGTCCCTTGTCTCCAAAGTGCCTTGTGTAACCCTTAGAAAGTTCCTAGCCAATCTTCAAGAGGTCATTTTGGGTACAAAGTTATCAATCCTATTTATCGCAATTCCGTTTGCCATTGCTGCCAAATA...

Protein

Download Protein FASTA

458 aa · TkA05G024790|TK1151|PROTEIN

MASTEPWLLENGTVKRLTKEARHGHGHSRTAHNMSSTSLRRKSDMSLVSKVPCVTLRKFLANLQEVILGTKLSILFIAIPFAIAAKYFGFARPWVFSLSLIGLMPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATELIIAIFALMENKVDVVKYSLLGSILSNLLLVLGTSLLCGGIANMSSEQKFDRKQADVNIALLLLGLLCHVLPLMYRYAANESTTADALSTATATLNLSRASSVVMLVAYFAYLIFQLWTHRH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G024790`
TK1151 ID	TkA05G024790
OH-1004 ID	LXL04_019163
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G024790

Location Chr05:6714565-6718620 (+)

Description Similar to CAX3: Vacuolar cation/proton exchanger 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g51860`	Vacuolar cation/proton exchanger (CAX).	Functional association of Arabidopsis CAX1 and CAX3 is required for normal growth and ion homeostasis.2005 · DOI: 10.1104/pp.105.061218
`At2g38170`	Vacuolar cation/proton exchanger (CAX).	The Arabidopsis cax1 mutant exhibits impaired ion homeostasis, development, and hormonal responses and reveals interplay among vacuolar transporters.2003 · DOI: 10.1105/tpc.007385 Mutations in the Ca2+/H+ transporter CAX1 increase CBF/DREB1 expression and the cold-acclimation response in Arabidopsis.2003 · DOI: 10.1105/tpc.015248 Functional association of Arabidopsis CAX1 and CAX3 is required for normal growth and ion homeostasis.2005 · DOI: 10.1104/pp.105.061218
`At5g01490`	Vacuolar cation/proton exchanger (CAX).	Enhanced Cd2+ -selective root-tonoplast-transport in tobaccos expressing Arabidopsis cation exchangers.2007 · DOI: 10.1007/s00425-006-0352-7

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0557500`	Vacuolar cation/proton exchanger (CAX).	Expression profile of the genes for rice cation/H+ exchanger family and functional analysis in yeast.2005 · DOI: 10.1093/pcp/pci173
`Os05g0594200`	Vacuolar cation/proton exchanger (CAX).	Expression profile of the genes for rice cation/H+ exchanger family and functional analysis in yeast.2005 · DOI: 10.1093/pcp/pci173

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019163 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006793 phosphorus metabolic process Biological Process

GO:0006812 monoatomic cation transport Biological Process

GO:0006816 calcium ion transport Biological Process

GO:0006874 intracellular calcium ion homeostasis Biological Process

GO:0006882 intracellular zinc ion homeostasis Biological Process

GO:0009624 response to nematode Biological Process

GO:0009631 cold acclimation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009733 response to auxin Biological Process

GO:0010119 regulation of stomatal movement Biological Process

GO:0010351 lithium ion transport Biological Process

GO:0030026 intracellular manganese ion homeostasis Biological Process

KEGG gene cross-reference

ath:AT2G38170

ath:AT3G51860

ath:AT5G01490

dosa:Os01g0557500

dosa:Os05g0594200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.428

Rank 1 · TkA05G024790 · TK1151

Lysosome / Vacuole0.286

Rank 2 · TkA05G024790 · TK1151

Cytoplasm0.196

Rank 3 · TkA05G024790 · TK1151

Golgi apparatus0.103

Rank 4 · TkA05G024790 · TK1151

Endoplasmic reticulum0.093

Rank 5 · TkA05G024790 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01699Na_Ca_ex94-256 aa

PF18955DUF5698279-305 aa

PF01699Na_Ca_ex289-426 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G024790	`PF01699`	Na_Ca_ex	94	256	5.4e-43	147.3
TkA05G024790	`PF18955`	DUF5698	279	305	0.034	15.3
TkA05G024790	`PF01699`	Na_Ca_ex	289	426	5.4e-43	147.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93Z81`	Arabidopsis thaliana	sp\|Q93Z81\|CAX3_ARATH Vacuolar cation/proton exchanger 3	69.500%	Swiss-Prot	High
`Q39253`	Arabidopsis thaliana	sp\|Q39253\|CAX1_ARATH Vacuolar cation/proton exchanger 1	66.300%	Swiss-Prot	High
`Q945S5`	Arabidopsis thaliana	sp\|Q945S5\|CAX4_ARATH Vacuolar cation/proton exchanger 4	56.100%	Swiss-Prot	High
`Q769E5`	Oryza sativa subsp. japonica	sp\|Q769E5\|CAX1A_ORYSJ Vacuolar cation/proton exchanger 1a	68.800%	Swiss-Prot	High
`Q5TKG3`	Oryza sativa subsp. japonica	sp\|Q5TKG3\|CAX1B_ORYSJ Vacuolar cation/proton exchanger 1b	61.500%	Swiss-Prot	High

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