TkA05G012270 | RubberDandelionOmics

Gene overview

TkA05G012270

Reference: TK1151 Chr: Chr05 Coordinates: 3487316-3488065 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

690 bp · TkA05G012270|TK1151|cDNA

ATGGCGGAGAATCTGAACTCTGAGACTGAGTCCACCACCACCACAAGATCCGACCCATTTTCTAAAGAAACGGGTTCGGGGGATCCGAGTAGGAAATGGGTCAAACGGAGTAGAGAAAATGCAGAAGATGATGATGGCAACAGCAAACTCACCAAAAGCAACAGCAACAGCAACAGTAAACATCCGGTTTACAGAGGCGTACGGCGGCGGGCATGGGGAAAATGGGTATCGGAGATCCGACAACCGAAGAAGAAATCTCG...

CDS

Download CDS FASTA

690 bp · TkA05G012270|TK1151|CDS

ATGGCGGAGAATCTGAACTCTGAGACTGAGTCCACCACCACCACAAGATCCGACCCATTTTCTAAAGAAACGGGTTCGGGGGATCCGAGTAGGAAATGGGTCAAACGGAGTAGAGAAAATGCAGAAGATGATGATGGCAACAGCAAACTCACCAAAAGCAACAGCAACAGCAACAGTAAACATCCGGTTTACAGAGGCGTACGGCGGCGGGCATGGGGAAAATGGGTATCGGAGATCCGACAACCGAAGAAGAAATCTCG...

Protein

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229 aa · TkA05G012270|TK1151|PROTEIN

MAENLNSETESTTTTRSDPFSKETGSGDPSRKWVKRSRENAEDDDGNSKLTKSNSNSNSKHPVYRGVRRRAWGKWVSEIRQPKKKSRIWLGTFPDPEMAARAHDVAALSIKGKSAILNFPELSGLLPRPVSCSPCDVQAAAAKAASMVHLNQITTSGKPPSEELCEIVELPSLGEGFHSEDFVFVDSGWDYYYGDGGCFGGEPSSVMPATSGHVISPGSFFFDALLWQY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G012270`
TK1151 ID	TkA05G012270
OH-1004 ID	LXL04_019023
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	90.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G012270

Location Chr05:3487316-3488065 (+)

Description Similar to TINY: Ethylene-responsive transcription factor TINY

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g11590`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At5g25810`	Putative transcriptional activator.	No verified direct reference in this release
`At3g60490`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At4g32800`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At1g01250`	Probably acts as a transcriptional activator.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019023 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009825 multidimensional cell growth Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT3G16280

ath:AT3G60490

ath:AT4G32800

ath:AT5G11590

ath:AT5G25810

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.968

Rank 1 · TkA05G012270 · TK1151

Cytoplasm0.087

Rank 2 · TkA05G012270 · TK1151

Cell membrane0.031

Rank 3 · TkA05G012270 · TK1151

Endoplasmic reticulum0.022

Rank 4 · TkA05G012270 · TK1151

Plastid0.017

Rank 5 · TkA05G012270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847AP262-112 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G012270	`PF00847`	AP2	62	112	9.9e-15	55.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LYD3`	Arabidopsis thaliana	sp\|Q9LYD3\|DREB3_ARATH Dehydration-responsive element-binding protein 3	57.700%	Swiss-Prot	Medium
`Q39127`	Arabidopsis thaliana	sp\|Q39127\|TINY_ARATH Ethylene-responsive transcription factor TINY	52.800%	Swiss-Prot	Medium
`Q9M210`	Arabidopsis thaliana	sp\|Q9M210\|ERF35_ARATH Ethylene-responsive transcription factor ERF035	61.900%	Swiss-Prot	Medium
`Q9M080`	Arabidopsis thaliana	sp\|Q9M080\|ERF43_ARATH Ethylene-responsive transcription factor ERF043	81.100%	Swiss-Prot	Low
`Q1ECI2`	Arabidopsis thaliana	sp\|Q1ECI2\|ERF23_ARATH Ethylene-responsive transcription factor ERF023	54.900%	Swiss-Prot	Medium

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