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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G011720
Reference: TK1151 Chr: Chr05 Coordinates: 3353875-3359764 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4188 bp · TkA05G011720|TK1151|cDNA

CCCAAGTGTCTACTTGCTTACACTCCATCAGCTAAAAAGCTGAGAACCTTGTCGCTCCACACATGCATCGATCCTTCACAAAAACATCTCCATTCTCTCTTGTCTACTCTCTACTCTTCTCCCCTTTTCCTGATCAAAACCCAGCTGTAATAACAAGGTGCGATAATTGTCAGCTTTTGCTTATTCTTTTTTTTTTATCTTCAATTTTAAGGTACAAGTGTGTTACACCCATCCATATCCATTCCCCAAACTCTTTGTGT...

CDS

Download CDS FASTA

3210 bp · TkA05G011720|TK1151|CDS

ATGGGTTGTGCTTTTTCAGTCGACTGTAGCTGTATCGGGGATATATGTTTACCTAGAGATCCTAAAGTAAAAGAAACCGACAATGTCGGTACATCTGAACTCGCCGTGTTCTCACCTAAATCTTCATTCAAGGAAGACGACGGAGACTCAAATCAGAATCCAGAAGCAGGAATAACAAGACTACGAAGAGTTTCATCACAGTTTTTACCACCAGATGGCTCTAGAATCGTCGTCATTCCAGCAGGAAACTACAGATTACA...

Protein

Download Protein FASTA

1069 aa · TkA05G011720|TK1151|PROTEIN

MGCAFSVDCSCIGDICLPRDPKVKETDNVGTSELAVFSPKSSFKEDDGDSNQNPEAGITRLRRVSSQFLPPDGSRIVVIPAGNYRLQYSYLSQRGYYPDALDKANQDSFCIHTPFGSNPNDHFFGVFDGHGEYGAQCSQFVKQKLCENLLRNSRFHVDPVDACHAAFLTTNSQLHADNNVDDSMSGTTAITVLVRGKTIYVANSGDSRAVIAEKRGTEIVAVDLSIDQTPYREDELERVKLCGARVLTLDQIEGLKNPDV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G011720
TK1151 IDTkA05G011720
OH-1004 IDLXL04_019019
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G011720
LocationChr05:3353875-3359764 (+)
DescriptionSimilar to At2g20050/At2g20040: Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
UniProt: Q9SL76 Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein. No verified direct reference in this release
At3g06270 Probable protein phosphatase 2C 35. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os07g0646100 Probable protein phosphatase 2C 65. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019019 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006468 protein phosphorylation Biological Process
GO:0007165 signal transduction Biological Process
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway Biological Process
GO:0007623 circadian rhythm Biological Process
GO:0032922 circadian regulation of gene expression Biological Process
GO:0035556 intracellular signal transduction Biological Process
GO:0036289 peptidyl-serine autophosphorylation Biological Process
GO:0046146 tetrahydrobiopterin metabolic process Biological Process
GO:0072659 protein localization to plasma membrane Biological Process
GO:1903829 positive regulation of protein localization Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
ath:AT2G20050
ath:AT3G06270
dosa:Os07g0646100
hsa:5593
rno:25523
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.506
Rank 1 · TkA05G011720 · TK1151
Cell membrane0.266
Rank 2 · TkA05G011720 · TK1151
Nucleus0.261
Rank 3 · TkA05G011720 · TK1151
Golgi apparatus0.101
Rank 4 · TkA05G011720 · TK1151
Lysosome / Vacuole0.072
Rank 5 · TkA05G011720 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13672PP2C_2105-216 aa
PF00481PP2C110-356 aa
PF07228SpoIIE171-217 aa
PF07228SpoIIE311-378 aa
PF13672PP2C_2315-345 aa
PF00027cNMP_binding324-356 aa
PF00027cNMP_binding492-582 aa
PF00027cNMP_binding618-715 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G011720PF13672PP2C_21052160.03814.3
TkA05G011720PF00481PP2C1103562.2e-37129.8
TkA05G011720PF07228SpoIIE1712170.04314.5
TkA05G011720PF07228SpoIIE3113780.04314.5
TkA05G011720PF13672PP2C_23153450.03814.3
TkA05G011720PF00027cNMP_binding3243566.4e-2794.1
TkA05G011720PF00027cNMP_binding4925826.4e-2794.1
TkA05G011720PF00027cNMP_binding6187156.4e-2794.1
TkA05G011720PF00069Pkinase77410112e-35123.2
TkA05G011720PF07714PK_Tyr_Ser-Thr7819963.9e-1040.2
TkA05G011720PF14531Kinase-like8319960.0001521.8
TkA05G011720PF07228SpoIIE102510410.04314.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SL76Arabidopsis thalianasp|Q9SL76|P2C19_ARATH Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein66.900%Swiss-ProtHigh
Q7XJ53Arabidopsis thalianasp|Q7XJ53|P2C35_ARATH Probable protein phosphatase 2C 3559.200%Swiss-ProtLow
Q8H2T0Oryza sativa subsp. japonicasp|Q8H2T0|P2C65_ORYSJ Probable protein phosphatase 2C 6550.200%Swiss-ProtLow

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