Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2883 bp · TkA05G006960|TK1151|cDNA
TGTCACTCTAAACACTTGATTATGCTCACTTTTCCTTCCCAATAATCCCTTCATCTTCACGACTGTGTGATCATCCCTTTTCAAGCTATGAAGTGAAATTAGAAGTGCAATTAGGGTTTTATAAGCAGCATGACTCTGTCGATATGGAATTTAACAATCTATCTATTTTATGGTGGAGATGATGCTGAATATGGAGGGTATGCAAGAGTAGAAGGGGAAAACAAAGATCCACAATCTGATTAAGAGTCTAGCAGTAGGGA...
1824 bp · TkA05G006960|TK1151|CDS
ATGGGAGAATACAGTAAAGAAAGGTTAAATTCCGTCGTCATCAAGAAGCACCGAAATGGTCCAATCACAAGCAAGTCAAAGATCCAAGCATCCACCACCATGGAAACGCATCTTCACGAAAAGGTCCAATCCGGTACAGATTCAGCTGTCGTGAGTTCACGAACACAATCACGCTGCGACATTTGTATGGAAGAAAACAACAACAGTTGCCAAACAGTCCGATCGAGAACCAAACTAATGAAGATCTTAATCGAAAGAAA...
Protein
Download Protein FASTA607 aa · TkA05G006960|TK1151|PROTEIN
MGEYSKERLNSVVIKKHRNGPITSKSKIQASTTMETHLHEKVQSGTDSAVVSSRTQSRCDICMEENNNSCQTVRSRTKLMKILIERKKPQEVQSIMKDLIDDGHIPTLVTYTTLLTALTLQKRFNSIPSLLSKVESNGLKPDSIFFNAIINAFSESGNIKEAMKMYKKMKDSGCKPTTSTLNTLIKGLGIIGKPEECLKLLEIMSIEEKVKPNDRTFNIITQAWCSKRNITEAWNVVDKMVVYGIKPDVVTYNTIAKAYA...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA05G006960 |
|---|---|
| TK1151 ID | TkA05G006960 |
| OH-1004 ID | LXL04_018977 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.800 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA05G006960 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:2060841-2070153 (+) | |||||||||
| Description | Similar to ATC401: Pentatricopeptide repeat-containing protein At5g21222 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006397 mRNA processing Biological Process GO:0005739 mitochondrion Cellular Component GO:0009507 chloroplast Cellular Component GO:0009536 plastid Cellular Component GO:0003729 mRNA binding Molecular Function GO:0004672 protein kinase activity Molecular Function GO:0005524 ATP binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G62930 ath:AT5G21222 ath:AT5G25630 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF18026Exog_C50-67 aaPF24760TPR_IF140_C65-110 aaPF08579RPM267-120 aaPF18026Exog_C71-86 aaPF13041PPR_277-118 aaPF17177PPR_long77-145 aaPF29070MSC6_N77-168 aaPF00637Clathrin77-98 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA05G006960 | PF18026 | Exog_C | 50 | 67 | 0.093 | 13.4 |
| TkA05G006960 | PF24760 | TPR_IF140_C | 65 | 110 | 3.4e-05 | 24.9 |
| TkA05G006960 | PF08579 | RPM2 | 67 | 120 | 0.35 | 12.0 |
| TkA05G006960 | PF18026 | Exog_C | 71 | 86 | 0.093 | 13.4 |
| TkA05G006960 | PF13041 | PPR_2 | 77 | 118 | 2.1e-85 | 281.3 |
| TkA05G006960 | PF17177 | PPR_long | 77 | 145 | 8.8e-33 | 114.2 |
| TkA05G006960 | PF29070 | MSC6_N | 77 | 168 | 1.1e-28 | 101.2 |
| TkA05G006960 | PF00637 | Clathrin | 77 | 98 | 0.021 | 15.3 |
| TkA05G006960 | PF01535 | PPR | 79 | 103 | 1.7e-60 | 197.8 |
| TkA05G006960 | PF12921 | ATP13 | 88 | 126 | 3.9e-11 | 43.6 |
| TkA05G006960 | PF13812 | PPR_3 | 94 | 153 | 7e-61 | 202.9 |
| TkA05G006960 | PF12854 | PPR_1 | 103 | 117 | 3.3e-71 | 235.4 |
| TkA05G006960 | PF01535 | PPR | 109 | 139 | 1.7e-60 | 197.8 |
| TkA05G006960 | PF25569 | TPR_ZFYVE26 | 110 | 175 | 0.027 | 15.4 |
| TkA05G006960 | PF00637 | Clathrin | 112 | 168 | 0.021 | 15.3 |
| TkA05G006960 | PF30475 | IFT56 | 120 | 172 | 0.00018 | 21.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.