TkA05G005690 | RubberDandelionOmics

Gene overview

TkA05G005690

Reference: TK1151 Chr: Chr05 Coordinates: 1724286-1727118 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2705 bp · TkA05G005690|TK1151|cDNA

CCGTGCTCCGCCGGCCTCCGGCCCTCTCATTATTTAATCCCTTTTCAATAAATATAAATTCCCATTCCATTTAGAGGGAGACTCTCACTTTCTAGACAGAGAGAGAATCGGTGGGTGTTGAGCTGTGATTTAGCTGTCTTCATTCCCCACCCTCCGTTCACACCTTCTCAAGCTTCCGTAGAAAACCCTACGTCTTCTCTCTCATATTTCAAAACCCTCATCTTCTTCTTCACCCACATTTTCAGTTTGTTTATTGCGTT...

CDS

Download CDS FASTA

1482 bp · TkA05G005690|TK1151|CDS

ATGTCGGATACTTTGAATGAGATTATTATGATGAACAATGGATTGAGGTCTTGTGTGCCGGAAGAAATGGGTTTGTTGAAGGAAGCGACAGTTATTGACGTGAGCTATAATCAGTTAATGGGGCCGTTGCCGGAAAGTCTTTCTGGCTTGGTGAGCGTGGAGCAGTTGAACGTGGCTCATAATTTCTTGACTGGAAGTATCCCGGAGAGTATTTGTAAACTGCCGAGGTTGGAGAATTTCACTTATTCCGATAATTTCTT...

Protein

Download Protein FASTA

493 aa · TkA05G005690|TK1151|PROTEIN

MSDTLNEIIMMNNGLRSCVPEEMGLLKEATVIDVSYNQLMGPLPESLSGLVSVEQLNVAHNFLTGSIPESICKLPRLENFTYSDNFFTGEPPACLSLASSDDRRNCLPARPAQRSQKQCDMMASKKIHCSAFRCTPFVPALPPPPPPSPPPPVFSPPPPVYSPPPPPPSPPPPVYSPPPPPPSPPPPVYSPPPPPPSPPPPSPPPPSPPPPVYSPPPPPPSPPPPSPPPPSPPPPSPPPPVYSPPPPPPSPPPPSPPPPS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G005690`
TK1151 ID	TkA05G005690
OH-1004 ID	LXL04_018323
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	89.900
Protein coverage (%)	TK1151 34.077 / OH-1004 22.520 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G005690

Location Chr05:1724286-1727118 (-)

Description Similar to LRX4: Leucine-rich repeat extensin-like protein 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g22800`	Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.	No verified direct reference in this release
`At5g25550`	Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.	No verified direct reference in this release
`At4g18670`	Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018323 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009860 pollen tube growth Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0099503 secretory vesicle Cellular Component

GO:0005199 structural constituent of cell wall Molecular Function

GO:0042277 peptide binding Molecular Function

KEGG gene cross-reference

ath:AT1G49490

ath:AT3G24480

ath:AT4G13340

ath:AT4G18670

ath:AT5G25550

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.818

Rank 1 · TkA05G005690 · TK1151

Endoplasmic reticulum0.084

Rank 2 · TkA05G005690 · TK1151

Cell membrane0.068

Rank 3 · TkA05G005690 · TK1151

Cytoplasm0.051

Rank 4 · TkA05G005690 · TK1151

Nucleus0.021

Rank 5 · TkA05G005690 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00560LRR_15-24 aa

PF13855LRR_810-61 aa

PF00560LRR_130-50 aa

PF13855LRR_830-80 aa

PF12799LRR_430-37 aa

PF12799LRR_431-62 aa

PF12799LRR_452-79 aa

PF00560LRR_153-74 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G005690	`PF00560`	LRR_1	5	24	3e-07	29.9
TkA05G005690	`PF13855`	LRR_8	10	61	8.5e-06	26.2
TkA05G005690	`PF00560`	LRR_1	30	50	3e-07	29.9
TkA05G005690	`PF13855`	LRR_8	30	80	8.5e-06	26.2
TkA05G005690	`PF12799`	LRR_4	30	37	0.31	12.1
TkA05G005690	`PF12799`	LRR_4	31	62	0.31	12.1
TkA05G005690	`PF12799`	LRR_4	52	79	0.31	12.1
TkA05G005690	`PF00560`	LRR_1	53	74	3e-07	29.9
TkA05G005690	`PF00560`	LRR_1	77	95	3e-07	29.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LUI1`	Arabidopsis thaliana	sp\|Q9LUI1\|LRX6_ARATH Leucine-rich repeat extensin-like protein 6	68.400%	Swiss-Prot	Low
`Q4PSE6`	Arabidopsis thaliana	sp\|Q4PSE6\|LRX7_ARATH Leucine-rich repeat extensin-like protein 7	56.600%	Swiss-Prot	Low
`Q9SN46`	Arabidopsis thaliana	sp\|Q9SN46\|LRX5_ARATH Leucine-rich repeat extensin-like protein 5	57.800%	Swiss-Prot	Low

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