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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G002200
Reference: TK1151 Chr: Chr05 Coordinates: 657165-663046 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2566 bp · TkA05G002200|TK1151|cDNA

AAATATCTGAGTTATATATTCACAATTTTGTACCAGAAAAAAAATAAACAACAAAGCAGGGTGGACTCCGCTTACGAAATCGATTCCTCCCTCTTTGCTTCTCTATCCACGAATCGACGAAAACCTTTTTAAGCTTTTGATCGCAGATTCTTTTCCTCCGCCATATCATAATCGTCTCAGTTTATACCTTGCTGAAGGGACTGGTGTCACAATGACGATGTCTCAGACAAAGACTATTGAGTTGGATGATGGATGGGCAT...

CDS

Download CDS FASTA

2226 bp · TkA05G002200|TK1151|CDS

ATGACGATGTCTCAGACAAAGACTATTGAGTTGGATGATGGATGGGCATACATGCAGACTGGGATTAAGAAGCTGAAGAAAATTTTGGAAGGTCATCCAGAGCCCCAATTTAGCTCAGAAGAATACATGATGCTTTACACCACCATCTATAACATGTGCACTCAGAAGCCTCCTCATGACTATTCCCAACAACTCTATGATAAATATAGAGAAGCCTTTGTTGATTATATTGGCTCAACGGTATTACCACAATTGAGAGA...

Protein

Download Protein FASTA

741 aa · TkA05G002200|TK1151|PROTEIN

MTMSQTKTIELDDGWAYMQTGIKKLKKILEGHPEPQFSSEEYMMLYTTIYNMCTQKPPHDYSQQLYDKYREAFVDYIGSTVLPQLREKHDEFMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARRSLPALNEVGLTCFRQSVYEEAKGKAKDAVIALIDQEREGEQIDRALLKNVLGIYVEIGMGQMDFYVNDFETDMLTDSAAYYSRKASNWIVEDSCPDYMLKAEDCLRKEKERVAHYLHSSSEPKLLENVQNELLV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G002200
TK1151 IDTkA05G002200
OH-1004 IDLXL04_018871
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 95.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G002200
LocationChr05:657165-663046 (-)
DescriptionSimilar to CUL1: Cullin-1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g02570 Involved in ubiquitination and subsequent proteasomal degradation of target proteins.
Null mutation of AtCUL1 causes arrest in early embryogenesis in Arabidopsis.2002 · DOI: 10.1091/mbc.e02-02-0077
Arabidopsis CAND1, an unmodified CUL1-interacting protein, is involved in multiple developmental pathways controlled by ubiquitin/proteasome-mediated protein Degradation.2004 · DOI: 10.1105/tpc.021949
At1g02980 Core component of multiple SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complexes. No verified direct reference in this release
At1g43140 Putative cullin-like protein 1. No verified direct reference in this release
At1g59790 Putative cullin-like protein 2. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0369000 Involved in ubiquitination and subsequent proteasomal degradation of target proteins. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018871 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0009733 response to auxin Biological Process
GO:0009734 auxin-activated signaling pathway Biological Process
GO:0009753 response to jasmonic acid Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0009867 jasmonic acid mediated signaling pathway Biological Process
GO:0009873 ethylene-activated signaling pathway Biological Process
GO:0010087 phloem or xylem histogenesis Biological Process
GO:0010265 SCF complex assembly Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0042752 regulation of circadian rhythm Biological Process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process
KEGG gene cross-reference
ath:AT1G02980
ath:AT1G43140
ath:AT1G59790
ath:AT4G02570
dosa:Os01g0369000
osa:4325735
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.652
Rank 1 · TkA05G002200 · TK1151
Nucleus0.249
Rank 2 · TkA05G002200 · TK1151
Cell membrane0.146
Rank 3 · TkA05G002200 · TK1151
Golgi apparatus0.146
Rank 4 · TkA05G002200 · TK1151
Lysosome / Vacuole0.084
Rank 5 · TkA05G002200 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00888Cullin25-486 aa
PF28135ELG1_C112-121 aa
PF28135ELG1_C232-246 aa
PF17221COMMD1_N398-430 aa
PF26557Cullin_AB430-445 aa
PF17221COMMD1_N464-522 aa
PF26557Cullin_AB511-644 aa
PF11554DUF3232638-699 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G002200PF00888Cullin254861.1e-133447.6
TkA05G002200PF28135ELG1_C1121210.08113.2
TkA05G002200PF28135ELG1_C2322460.08113.2
TkA05G002200PF17221COMMD1_N3984300.1513.1
TkA05G002200PF26557Cullin_AB4304459.2e-44149.6
TkA05G002200PF17221COMMD1_N4645220.1513.1
TkA05G002200PF26557Cullin_AB5116449.2e-44149.6
TkA05G002200PF11554DUF32326386990.1512.8
TkA05G002200PF10557Cullin_Nedd86717333.3e-2795.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q94AH6Arabidopsis thalianasp|Q94AH6|CUL1_ARATH Cullin-180.900%Swiss-ProtHigh
Q9SRZ0Arabidopsis thalianasp|Q9SRZ0|CUL2_ARATH Cullin-266.700%Swiss-ProtHigh
P0CH31Arabidopsis thalianasp|P0CH31|CLL1_ARATH Putative cullin-like protein 165.300%Swiss-ProtHigh
Q9XIE9Arabidopsis thalianasp|Q9XIE9|CLL2_ARATH Putative cullin-like protein 258.200%Swiss-ProtLow
Q5ZC88Oryza sativa subsp. japonicasp|Q5ZC88|CUL1_ORYSJ Cullin-176.900%Swiss-ProtHigh

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