RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G505530
Reference: TK1151 Chr: Chr04 Coordinates: 127696530-127701608 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1039 bp · TkA04G505530|TK1151|cDNA

TCTATTTCTACGACCGTTCAATCAAACTACATATCGTCATTTACATCTATGTATAAACACACTATATATACAACCCTTCAACTACTGCATTGACATTCTATCTATTTTCTTCAATTACCAAGTTTATTCCCAAATTTCTCAAACAATACTAGCTAAAAAGCACATAAATGTCATTCTGCATGTCAAGATTGATTGGTACTTCGTTGGTATCCGCACACCCAAATCTCAGTTCCACATCTTTTGCAGTTACTCCAATTGCT...

CDS

Download CDS FASTA

672 bp · TkA04G505530|TK1151|CDS

ATGTCATTCTGCATGTCAAGATTGATTGGTACTTCGTTGGTATCCGCACACCCAAATCTCAGTTCCACATCTTTTGCAGTTACTCCAATTGCTCATACATCAATCTCAAAGAACAAGGATCTTTCATTATGCAATATTCCTGGCTTAAGTAGCAGATGCGTGCAGAATGGTCCACCACGACGAAAGTTTGCTGTTTGCAGCAATATTACTCCACCACCTGGAGTTCCTCTTCCTTCTGGACCACCTTCCGGTTCTATGAA...

Protein

Download Protein FASTA

223 aa · TkA04G505530|TK1151|PROTEIN

MSFCMSRLIGTSLVSAHPNLSSTSFAVTPIAHTSISKNKDLSLCNIPGLSSRCVQNGPPRRKFAVCSNITPPPGVPLPSGPPSGSMKSWVLGIVLTFVLPFITHKWGPLIVLKNKVDTVVDMAEHIAEVIEDVAEKVDGVIDNITDDLPDNSELKKTLKALDALVEGVAKTAHIANDIIDKVEEAEDKLESLILSDAREGKVSKQVAEKMEVSTIESNALKIE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G505530
TK1151 IDTkA04G505530
OH-1004 IDLXL04_039120
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G505530
LocationChr04:127696530-127701608 (+)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_039120 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)No functional description available
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.983
Rank 1 · TkA04G505530 · TK1151
Mitochondrion0.023
Rank 2 · TkA04G505530 · TK1151
Nucleus0.017
Rank 3 · TkA04G505530 · TK1151
Cytoplasm0.016
Rank 4 · TkA04G505530 · TK1151
Cell membrane0.011
Rank 5 · TkA04G505530 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07889DUF1664112-191 aa
PF08066PMC2NT113-145 aa
PF07278DUF1441113-150 aa
PF19111DUF5798114-181 aa
PF26891Phage_N4_Gp1117-156 aa
PF12732YtxH117-146 aa
PF23854DUF7217118-193 aa
PF18659CelTOS121-156 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G505530PF07889DUF16641121910.9910.2
TkA04G505530PF08066PMC2NT1131450.1713.2
TkA04G505530PF07278DUF14411131501.99.2
TkA04G505530PF19111DUF57981141810.07414.0
TkA04G505530PF26891Phage_N4_Gp11171560.03315.2
TkA04G505530PF12732YtxH1171462.29.5
TkA04G505530PF23854DUF72171181932.58.6
TkA04G505530PF18659CelTOS1211563.48.8
TkA04G505530PF24564DUF76051222120.1812.4
TkA04G505530PF00015MCPsignal1232110.212.2
TkA04G505530PF05531NPV_P101261790.1213.5
TkA04G505530PF06103DUF9481301920.4611.4
TkA04G505530PF08066PMC2NT1531900.1713.2
TkA04G505530PF12732YtxH1541892.29.5
TkA04G505530PF18659CelTOS1592153.48.8
TkA04G505530PF26891Phage_N4_Gp11632190.03315.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser