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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G505010
Reference: TK1151 Chr: Chr04 Coordinates: 127560133-127561480 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1041 bp · TkA04G505010|TK1151|cDNA

ATGGAATATTATCACCGGAAACTGTTGCCGGAACCAGATTCCAGCCAAACTGGAGACTGTTCCGACTGTGGTTCAACCTGCCAATACGACTGCGACTACGTATCAATCTATTGGCCGCCGGAGCGACCACAATTACCGCCATCACCAACAACCAATACGGACAGCTCCACCACACATATTTCTCCTCTTATCATCGTCATGGTCGCCTTGATTGCCAGTGCAGTTCTGTTTATCAGCTACTACGTTATCATGAAAAGATA...

CDS

Download CDS FASTA

1041 bp · TkA04G505010|TK1151|CDS

ATGGAATATTATCACCGGAAACTGTTGCCGGAACCAGATTCCAGCCAAACTGGAGACTGTTCCGACTGTGGTTCAACCTGCCAATACGACTGCGACTACGTATCAATCTATTGGCCGCCGGAGCGACCACAATTACCGCCATCACCAACAACCAATACGGACAGCTCCACCACACATATTTCTCCTCTTATCATCGTCATGGTCGCCTTGATTGCCAGTGCAGTTCTGTTTATCAGCTACTACGTTATCATGAAAAGATA...

Protein

Download Protein FASTA

346 aa · TkA04G505010|TK1151|PROTEIN

MEYYHRKLLPEPDSSQTGDCSDCGSTCQYDCDYVSIYWPPERPQLPPSPTTNTDSSTTHISPLIIVMVALIASAVLFISYYVIMKRYCARFRQPFATQVNEESQDFVNEDHQPEIDHPIWYINTIGLQPAVIRSITVVKFKKGENLIDVTDCSVCLSQFEDDESLRLLPKCKHAFHITCIDTWLRSHTNCPLCRAAVLSNNSNTNSQSNDQNRNHVFGLNQNTQRENAENNGELRSNRVQEIGIRENRRETGNGVEVEED...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G505010
TK1151 IDTkA04G505010
OH-1004 IDLXL04_039113
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G505010
LocationChr04:127560133-127561480 (+)
DescriptionSimilar to ATL54: RING-H2 finger protein ATL54
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g72220 RING-H2 finger protein ATL54. No verified direct reference in this release
At5g17600 RING-H2 finger protein ATL52. No verified direct reference in this release
At5g10380 E3 ubiquitin-protein ligase that may be involved in positive regulation of programmed cell death (PCD) by facilitating degradation of negative regulators of PCD.
RING1 E3 ligase localizes to plasma membrane lipid rafts to trigger FB1-induced programmed cell death in Arabidopsis.2008 · DOI: 10.1111/j.1365-313x.2008.03625.x
At4g17905 Putative RING-H2 finger protein ATL53. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0590900 Possesses E3 ubiquitin-protein ligase in vitro. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_039113 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002238 response to molecule of fungal origin Biological Process
GO:0006952 defense response Biological Process
GO:0009617 response to bacterium Biological Process
GO:0012501 programmed cell death Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0043068 positive regulation of programmed cell death Biological Process
GO:0051865 protein autoubiquitination Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
KEGG gene cross-reference
ath:AT1G72220
ath:AT3G03550
ath:AT5G10380
ath:AT5G17600
dosa:Os04g0590900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.320
Rank 1 · TkA04G505010 · TK1151
Cytoplasm0.240
Rank 2 · TkA04G505010 · TK1151
Endoplasmic reticulum0.209
Rank 3 · TkA04G505010 · TK1151
Lysosome / Vacuole0.199
Rank 4 · TkA04G505010 · TK1151
Nucleus0.195
Rank 5 · TkA04G505010 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13923zf-C3HC4_220-25 aa
PF12861zf-ANAPC1123-32 aa
PF15102TMEM15451-108 aa
PF01889AliA_AliB54-161 aa
PF13639zf-RING_2151-194 aa
PF17123zf-RING_11151-180 aa
PF14634zf-RING_5151-194 aa
PF13920zf-C3HC4_3151-197 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G505010PF13923zf-C3HC4_220251.3e-0732.0
TkA04G505010PF12861zf-ANAPC1123325.1e-0627.1
TkA04G505010PF15102TMEM154511080.02914.9
TkA04G505010PF01889AliA_AliB541610.1113.5
TkA04G505010PF13639zf-RING_21511946e-1452.7
TkA04G505010PF17123zf-RING_111511801.7e-1041.1
TkA04G505010PF14634zf-RING_51511949.4e-0523.0
TkA04G505010PF13920zf-C3HC4_31511970.00417.6
TkA04G505010PF13923zf-C3HC4_21521931.3e-0732.0
TkA04G505010PF00097zf-C3HC41521931.7e-0731.7
TkA04G505010PF13445zf-RING_UBOX1521910.0001422.5
TkA04G505010PF12906RINGv1521930.1413.0
TkA04G505010PF24921RING_XB3-XBAT311521972.29.1
TkA04G505010PF12678zf-rbx11541946.3e-1039.9
TkA04G505010PF12861zf-ANAPC111591965.1e-0627.1
TkA04G505010PF23413zf_RING_Vps8_fungal1691810.112.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8LFY8Arabidopsis thalianasp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL5441.800%Swiss-ProtMedium
Q9LF64Arabidopsis thalianasp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL5245.600%Swiss-ProtLow
Q9LX93Arabidopsis thalianasp|Q9LX93|ATL55_ARATH E3 ubiquitin-protein ligase RING148.300%Swiss-ProtLow
P0C041Arabidopsis thalianasp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL5338.300%Swiss-ProtMedium
Q7XLY8Oryza sativa subsp. japonicasp|Q7XLY8|ATL41_ORYSJ E3 ubiquitin-protein ligase Os04g059090038.300%Swiss-ProtMedium

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