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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G503310
Reference: TK1151 Chr: Chr04 Coordinates: 127127747-127129572 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

612 bp · TkA04G503310|TK1151|cDNA

ATGTTCATCGTTTATGCTGACCTGGGGGTATCCGATTCTACTTCTAATCTCAAGGTGTTCGATGTAATGTCACAAAGAGGTCACTGTATGGATATTTTAGAAGCTGAAGTTGCGGAGATACTGGTAGAGTATGGTGTGGAGTCCCATGAATATGGCTCTGTGGTGAATGAATACAAAATCAAAGAAACCGACATGTTCACAGCAGAAAAATATCAACAGATTGGTTTCTTTCCCCACGAAAAGGCGTTTGCATTAAGGTA...

CDS

Download CDS FASTA

612 bp · TkA04G503310|TK1151|CDS

ATGTTCATCGTTTATGCTGACCTGGGGGTATCCGATTCTACTTCTAATCTCAAGGTGTTCGATGTAATGTCACAAAGAGGTCACTGTATGGATATTTTAGAAGCTGAAGTTGCGGAGATACTGGTAGAGTATGGTGTGGAGTCCCATGAATATGGCTCTGTGGTGAATGAATACAAAATCAAAGAAACCGACATGTTCACAGCAGAAAAATATCAACAGATTGGTTTCTTTCCCCACGAAAAGGCGTTTGCATTAAGGTA...

Protein

Download Protein FASTA

203 aa · TkA04G503310|TK1151|PROTEIN

MFIVYADLGVSDSTSNLKVFDVMSQRGHCMDILEAEVAEILVEYGVESHEYGSVVNEYKIKETDMFTAEKYQQIGFFPHEKAFALRYQTTDMLETILRESVLGEDDIREESPKNLKFPFQFPSTVCDNCLYSSDKELRARAFHIMGTKGIVEMLIIFVGQNGAGVVTPPSLDESKANSNERHLDNSFAFGGRSKASPSWYVFH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G503310
TK1151 IDTkA04G503310
OH-1004 IDLXL04_023964
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)80.800
Protein coverage (%)TK1151 12.808 / OH-1004 21.849
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G503310
LocationChr04:127127747-127129572 (+)
DescriptionSimilar to GAUT14: Probable galacturonosyltransferase 14
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_023964 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0009555 pollen development Biological Process
GO:0009860 pollen tube growth Biological Process
GO:0009873 ethylene-activated signaling pathway Biological Process
GO:0009909 regulation of flower development Biological Process
GO:0010228 vegetative to reproductive phase transition of meristem Biological Process
GO:0010581 regulation of starch biosynthetic process Biological Process
GO:0045824 negative regulation of innate immune response Biological Process
GO:0045892 negative regulation of DNA-templated transcription Biological Process
GO:0048358 mucilage pectin biosynthetic process Biological Process
GO:0052325 cell wall pectin biosynthetic process Biological Process
KEGG gene cross-reference
ath:AT2G28550
ath:AT3G01040
ath:AT5G15470
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.435
Rank 1 · TkA04G503310 · TK1151
Nucleus0.397
Rank 2 · TkA04G503310 · TK1151
Mitochondrion0.116
Rank 3 · TkA04G503310 · TK1151
Cell membrane0.097
Rank 4 · TkA04G503310 · TK1151
Endoplasmic reticulum0.063
Rank 5 · TkA04G503310 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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