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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G501750
Reference: TK1151 Chr: Chr04 Coordinates: 126691810-126697273 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4785 bp · TkA04G501750|TK1151|cDNA

ATGGGGATCACTAATGTGACACCAGTTCCATATTCTCGACAGGACTCCTCTAGCGAAGGGGCAAGCACCGAAGTTGTGGTCCGCCTGTTACCGACTTAAACCCGTCCTGTGTAAAACAAATAAAATCCCCCCAATAAGGCAATAACCATTACACTCATTTTCGACTTTCGTATCCACAACTCGACGTATCAGAGATCACAGCAAACAAATTCGAGTTCCAAATTTATAATTCCAGTCGTCCACGGTCCACCTCTTTCCCT...

CDS

Download CDS FASTA

3822 bp · TkA04G501750|TK1151|CDS

ATGGATCCAGTGGATGCAGAGATAGCGAAGACACAGGAAGAGAGGAAGATTATGGAGGCAGCCCTAGCCCCCAACTCGATCACATTTGACACGGAACTTTATGATGGCAGCAACCGATTTGAGGATTACAACAGGGAGATCCCGGCTAACGATGAGGAGGAAAACGCGGATGCCATGGACAATGAAGTTGCACGGAAGTTGGCTTCTTACACTGCCCCGAGGTCTCTGTTGAACGAGATGCCGAGGGGGGGAGACGATGA...

Protein

Download Protein FASTA

1273 aa · TkA04G501750|TK1151|PROTEIN

MDPVDAEIAKTQEERKIMEAALAPNSITFDTELYDGSNRFEDYNREIPANDEEENADAMDNEVARKLASYTAPRSLLNEMPRGGDDDESTGFPKSQKIIDREDEYRRRRLNQVISPERHDAFANGDKTPKPETRSYADIMREAALKREKEETLKVIARRKKEEEENKAAGKEKEKEREREQQPQAQPSQKRRNRWDQNQEKSDGKKAKTGLDWDMPEDGMSTPGRWDATPTPGRMGDALSRKNRWDETPTPGRTGADSDS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G501750
TK1151 IDTkA04G501750
OH-1004 IDLXL04_039072
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.800
Protein coverage (%)TK1151 98.665 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G501750
LocationChr04:126691810-126697273 (-)
DescriptionSimilar to sf3b1: Splicing factor 3B subunit 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_039072 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000245 spliceosomal complex assembly Biological Process
GO:0000375 RNA splicing, via transesterification reactions Biological Process
GO:0000387 spliceosomal snRNP assembly Biological Process
GO:0000388 spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) Biological Process
GO:0000398 mRNA splicing, via spliceosome Biological Process
GO:0006338 chromatin remodeling Biological Process
GO:0008380 RNA splicing Biological Process
GO:0009952 anterior/posterior pattern specification Biological Process
GO:0045292 mRNA cis splicing, via spliceosome Biological Process
GO:0045943 positive regulation of transcription by RNA polymerase I Biological Process
GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process
GO:0045945 positive regulation of transcription by RNA polymerase III Biological Process
KEGG gene cross-reference
hsa:23451
spo:2541619
xla:399336
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.542
Rank 1 · TkA04G501750 · TK1151
Nucleus0.462
Rank 2 · TkA04G501750 · TK1151
Cell membrane0.140
Rank 3 · TkA04G501750 · TK1151
Endoplasmic reticulum0.047
Rank 4 · TkA04G501750 · TK1151
Lysosome / Vacuole0.038
Rank 5 · TkA04G501750 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08920SF3b1189-232 aa
PF08920SF3b1240-289 aa
PF08920SF3b1286-416 aa
PF12717Cnd1455-473 aa
PF23227HEAT_MROH2B_C466-553 aa
PF13513HEAT_EZ488-512 aa
PF22956PIK3R4-like_middle499-584 aa
PF25757TPR_DNAAF5514-569 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G501750PF08920SF3b11892324.4e-50170.2
TkA04G501750PF08920SF3b12402894.4e-50170.2
TkA04G501750PF08920SF3b12864164.4e-50170.2
TkA04G501750PF12717Cnd14554739.3e-0833.0
TkA04G501750PF23227HEAT_MROH2B_C4665535.7e-1452.8
TkA04G501750PF13513HEAT_EZ4885121.5e-1351.6
TkA04G501750PF22956PIK3R4-like_middle4995840.0001321.5
TkA04G501750PF25757TPR_DNAAF55145693.7e-1040.2
TkA04G501750PF13513HEAT_EZ5195521.5e-1351.6
TkA04G501750PF12755Vac14_Fab1_bd5295720.0005521.2
TkA04G501750PF24714TOR1L1_N5305694.1e-1763.2
TkA04G501750PF21041XMAP215_CLASP_TOG5355746.9e-0626.7
TkA04G501750PF13646HEAT_25506296.2e-0833.5
TkA04G501750PF12717Cnd15765969.3e-0833.0
TkA04G501750PF01602Adaptin_N5766710.0005619.3
TkA04G501750PF02985HEAT5886031.2e-1247.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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