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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G500870
Reference: TK1151 Chr: Chr04 Coordinates: 126466920-126468914 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1109 bp · TkA04G500870|TK1151|cDNA

GTCACCTAATGAAAACTTCCTTTAAGCGGTCTAAACCCCAGTTAAACGGGGGTTTCTCGATTTGTTACGGGATTCAAAGCAAACGCGAGCAAAGCAATACGAATATGGCGCCAAAGTCGAGCAAGAATCGTTCCCCACCGTCGGATCCTGATGGTATCTTCTCTGGTATGGTCGTCTTCCTTGTCGATACTGACGTACAGAGACGTCGTTTGGAGATATGGAAGCAAAAGCTGGTGCAGATGGGAGCAATTTTAGAAGAA...

CDS

Download CDS FASTA

1101 bp · TkA04G500870|TK1151|CDS

ATGAAAACTTCCTTTAAGCGGTCTAAACCCCAGTTAAACGGGGGTTTCTCGATTTGTTACGGGATTCAAAGCAAACGCGAGCAAAGCAATACGAATATGGCGCCAAAGTCGAGCAAGAATCGTTCCCCACCGTCGGATCCTGATGGTATCTTCTCTGGTATGGTCGTCTTCCTTGTCGATACTGACGTACAGAGACGTCGTTTGGAGATATGGAAGCAAAAGCTGGTGCAGATGGGAGCAATTTTAGAAGAAGAAAATTT...

Protein

Download Protein FASTA

366 aa · TkA04G500870|TK1151|PROTEIN

MKTSFKRSKPQLNGGFSICYGIQSKREQSNTNMAPKSSKNRSPPSDPDGIFSGMVVFLVDTDVQRRRLEIWKQKLVQMGAILEEENLSRNVTHVFAINLESLCNKFEQKLLQRFKGTILLYQWLEETLRLGKKVNEESYTIHFDSPKKTGNENHEVKESNEDHLHLHKKLKSSPNNSETSSPEMKDKSLDQKVNAPDPSLPYHPPDLNRNITEIFGKLINIYRALGDDRRSFSYYKAIPVIERLPFKIESVDQVKHLPAI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G500870
TK1151 IDTkA04G500870
OH-1004 IDLXL04_039067
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)99.400
Protein coverage (%)TK1151 93.716 / OH-1004 63.401
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G500870
LocationChr04:126466920-126468914 (+)
DescriptionSimilar to POLL: DNA polymerase lambda
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g10520 Repair polymerase involved in base excision repair (BER) and responsible for repair of lesions that give rise to abasic (AP) sites in DNA. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os06g0237200 Repair polymerase involved in base excision repair (BER) and responsible for repair of lesions that give rise to abasic (AP) sites in DNA. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_039067 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000724 double-strand break repair via homologous recombination Biological Process
GO:0006260 DNA replication Biological Process
GO:0006287 base-excision repair, gap-filling Biological Process
GO:0006289 nucleotide-excision repair Biological Process
GO:0006302 double-strand break repair Biological Process
GO:0006303 double-strand break repair via nonhomologous end joining Biological Process
GO:0010224 response to UV-B Biological Process
GO:0071897 DNA biosynthetic process Biological Process
GO:0097510 base-excision repair, AP site formation via deaminated base removal Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0035861 site of double-strand break Cellular Component
KEGG gene cross-reference
ath:AT1G10520
dosa:Os06g0237200
hsa:27343
rno:361767
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.826
Rank 1 · TkA04G500870 · TK1151
Cytoplasm0.216
Rank 2 · TkA04G500870 · TK1151
Mitochondrion0.053
Rank 3 · TkA04G500870 · TK1151
Cell membrane0.031
Rank 4 · TkA04G500870 · TK1151
Endoplasmic reticulum0.018
Rank 5 · TkA04G500870 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06087Tyr-DNA_phospho4-34 aa
PF06087Tyr-DNA_phospho72-129 aa
PF21999IMS_HHH_190-110 aa
PF14716HHH_8120-132 aa
PF14716HHH_8208-277 aa
PF11731Cdd1249-271 aa
PF21999IMS_HHH_1255-271 aa
PF14716HHH_8288-312 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G500870PF06087Tyr-DNA_phospho4340.05713.0
TkA04G500870PF06087Tyr-DNA_phospho721290.05713.0
TkA04G500870PF21999IMS_HHH_1901100.03815.2
TkA04G500870PF14716HHH_81201321e-1455.4
TkA04G500870PF14716HHH_82082771e-1455.4
TkA04G500870PF11731Cdd12492710.003618.2
TkA04G500870PF21999IMS_HHH_12552710.03815.2
TkA04G500870PF14716HHH_82883121e-1455.4
TkA04G500870PF11731Cdd12933270.003618.2
TkA04G500870PF10391DNA_pol_lambd_f2943411.5e-1970.2
TkA04G500870PF14520HHH_53003240.0001522.8
TkA04G500870PF21999IMS_HHH_13003220.03815.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FNY4Arabidopsis thalianasp|Q9FNY4|DPOLL_ARATH DNA polymerase lambda58.500%Swiss-ProtHigh
Q67VC8Oryza sativa subsp. japonicasp|Q67VC8|DPOLL_ORYSJ DNA polymerase lambda50.600%Swiss-ProtHigh

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