Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1338 bp · TkA04G471680|TK1151|cDNA
TATGAGTAGGCCCGGGTTCAGAGTTCAGACCCCCAAATTAGTTTCAAATAGCTCCCATGCAATTAAAAGAATATCAATTTAACCCTTTTTAGTCCTCTTTAATGTAGCAATAACCATGATGCTCTTTCGCTCTCCTCTGCCCTCATTCAACCTACGTCCTGCTTCTATCTCCCCAACATCCGCCACCGTCTTCCGATCTCTATTCATGGCGGTCCAACACCAGTACAATTCTAAGAATCCCAATTTGGATAAAGACCCCA...
1050 bp · TkA04G471680|TK1151|CDS
ATGATGCTCTTTCGCTCTCCTCTGCCCTCATTCAACCTACGTCCTGCTTCTATCTCCCCAACATCCGCCACCGTCTTCCGATCTCTATTCATGGCGGTCCAACACCAGTACAATTCTAAGAATCCCAATTTGGATAAAGACCCCAAGTTTTTAGAGAACTACCCAGTGCCACTCTCCCCGCCATTGCCGGCCATATCTAAGGACATAGAGCTTAGAAGAGCCATGTCAGCTTCTTCAAAATCAAGTCTCTTTTCTCTTTG...
Protein
Download Protein FASTA349 aa · TkA04G471680|TK1151|PROTEIN
MMLFRSPLPSFNLRPASISPTSATVFRSLFMAVQHQYNSKNPNLDKDPKFLENYPVPLSPPLPAISKDIELRRAMSASSKSSLFSLCRSDVLFEDEWLIALNKPQGIYCETILASVPSLLNDSSDESVESGTESKKRELHLANRLDRDTSGVILITKSHKVAAKLVKAFTDHKVKKTYIALCVGHAPNWKNITIKSGHGRSKFGAWRVYAARDVGRILPGGSSIKDMETLFEVVSVNGEEGCKDLSELDLVVEEKSVIKC...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA04G471680 |
|---|---|
| TK1151 ID | TkA04G471680 |
| OH-1004 ID | LXL04_038855 |
| Relationship / confidence | Multi Candidate From Tk1151 / Complex relationship |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 91.404 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA04G471680 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:119126283-119127785 (+) | ||||||||||||
| Description | Similar to At1g56345: RNA pseudouridine synthase 1 | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
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| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0000455 enzyme-directed rRNA pseudouridine synthesis Biological Process GO:0009507 chloroplast Cellular Component GO:0003723 RNA binding Molecular Function GO:0009982 pseudouridine synthase activity Molecular Function GO:0160141 23S rRNA pseudouridine(955/2504/2580) synthase activity Molecular Function | ||||||||||||
| KEGG gene cross-reference | ath:AT1G56345 dosa:Os12g0560500 pmu:PM0992 rpr:RP258 rty:RT0249 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00849PseudoU_synth_298-286 aaPF11995DUF3490132-181 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA04G471680 | PF00849 | PseudoU_synth_2 | 98 | 286 | 2.6e-23 | 83.6 |
| TkA04G471680 | PF11995 | DUF3490 | 132 | 181 | 0.0034 | 17.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.