TkA04G463250 | RubberDandelionOmics

Gene overview

TkA04G463250

Reference: TK1151 Chr: Chr04 Coordinates: 116947683-116948450 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

738 bp · TkA04G463250|TK1151|cDNA

ATGACAGATGGGTCCTCACTTGCTAAATATATTGAAGTACTTGTAAGTGGTTACTACTTCATTGAAGAACATGTAGTAGAACCCGATGCTTTGAGTCCCGATCCTGATCATATTCTTGGCTTTTTACACAAATATTTCCGGCCTGCAGAACCGATGCCACCAACATCTCAGTCAAGTACAAAACGGCACACGGCCATGGAATTGGATAGGGCAGGGATGAAATTCAAACCTATTAATGAAAATAAAAATTGGGTACTAGA...

CDS

Download CDS FASTA

738 bp · TkA04G463250|TK1151|CDS

ATGACAGATGGGTCCTCACTTGCTAAATATATTGAAGTACTTGTAAGTGGTTACTACTTCATTGAAGAACATGTAGTAGAACCCGATGCTTTGAGTCCCGATCCTGATCATATTCTTGGCTTTTTACACAAATATTTCCGGCCTGCAGAACCGATGCCACCAACATCTCAGTCAAGTACAAAACGGCACACGGCCATGGAATTGGATAGGGCAGGGATGAAATTCAAACCTATTAATGAAAATAAAAATTGGGTACTAGA...

Protein

Download Protein FASTA

245 aa · TkA04G463250|TK1151|PROTEIN

MTDGSSLAKYIEVLVSGYYFIEEHVVEPDALSPDPDHILGFLHKYFRPAEPMPPTSQSSTKRHTAMELDRAGMKFKPINENKNWVLDMKMAIPQFSWFRRPTMRMPKLKIHDQSELILRNLIVYEQSSDVEKYVTSYVFVLDMLIDTPQDVALLIKSQVLTSYFGSNEEAADMINKLCKNIPFSDFFHEQHWEGMDIYYNSYWPNTLAGLKRTYFNNPWNIIALIAAFVLFALTITQTITGIKAA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G463250`
TK1151 ID	TkA04G463250
OH-1004 ID	LXL04_038766
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	93.200
Protein coverage (%)	TK1151 97.959 / OH-1004 44.248 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA04G463250`
Location	Chr04:116947683-116948450 (+)
Description	Similar to BOP1: Ribosome biogenesis protein BOP1 homolog
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_038766` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000027 ribosomal large subunit assembly Biological Process GO:0000448 cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process GO:0000460 maturation of 5.8S rRNA Biological Process GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process GO:0006364 rRNA processing Biological Process GO:0007276 gamete generation Biological Process GO:0008283 cell population proliferation Biological Process GO:0042273 ribosomal large subunit biogenesis Biological Process GO:0051302 regulation of cell division Biological Process GO:0051726 regulation of cell cycle Biological Process GO:0005634 nucleus Cellular Component
KEGG gene cross-reference	ath:AT2G40360 dosa:Os07g0435400 mbr:MONBRDRAFT_37129 mmu:12181 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.892

Rank 1 · TkA04G463250 · TK1151

Cytoplasm0.087

Rank 2 · TkA04G463250 · TK1151

Endoplasmic reticulum0.061

Rank 3 · TkA04G463250 · TK1151

Nucleus0.036

Rank 4 · TkA04G463250 · TK1151

Lysosome / Vacuole0.020

Rank 5 · TkA04G463250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03140DUF24729-233 aa

PF00520Ion_trans131-158 aa

PF00520Ion_trans208-236 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G463250	`PF03140`	DUF247	29	233	5.6e-50	171.6
TkA04G463250	`PF00520`	Ion_trans	131	158	0.015	15.2
TkA04G463250	`PF00520`	Ion_trans	208	236	0.015	15.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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