TkA04G462760 | RubberDandelionOmics

Gene overview

TkA04G462760

Reference: TK1151 Chr: Chr04 Coordinates: 116822877-116825947 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1737 bp · TkA04G462760|TK1151|cDNA

CCCATCAAAAGTTTGATTGAGAAGTTAGAGGGAGAGAGAAGAGAACCGGATGAGACGTGGAGTCTTCTTCCCCTCCCCAAAACGTATACTTTTGCTTTTTCAAAAATCATATCAAATCCAAATTGCACTAATCTTCATCTCTTCTTCCCCGATCTGATGCGAACACCCTATCACACTCCCCACACCCCAGCTGTTACCACCTAACTCAACTTCAACCCACTAGATCTCTCAGTAATCCATCACCCTGCTATCAGTTTCTC...

CDS

Download CDS FASTA

1053 bp · TkA04G462760|TK1151|CDS

ATGGCCTCCCACAGCTGGAGGGATGCTTACAGGGGCATGTCTGCGGATAATATCAAGGGTTTGGTTTTAGCATTGTCTTCTAGTTTGTTCATTGGTGCTAGCTTCATTGTTAAGAAAAAGGGTCTCAAGAAAGCAGGCGCCTCTGGTATTAGAGCAGGGAGCGGAGGATATTCATACTTATACGAGCCTCTATGGTGGGTAGGCTTAATAACGATGATTGTTGGAGAAATTGCAAATTTTGCAGCATACGCATTTGCACC...

Protein

Download Protein FASTA

350 aa · TkA04G462760|TK1151|PROTEIN

MASHSWRDAYRGMSADNIKGLVLALSSSLFIGASFIVKKKGLKKAGASGIRAGSGGYSYLYEPLWWVGLITMIVGEIANFAAYAFAPAILVTPLGALSIIISAVLAHIILRERLHIFGILGCVLCVVGSITIVLHAPQERQIESVTEVWGLATEPGFLLYAVMVLIAVFILVFHYIPLYGQTHIMCYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLVYPQTWAFTLVVLLCVITQMNYLNKALDTFNTAVVSPIYYV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G462760`
TK1151 ID	TkA04G462760
OH-1004 ID	LXL04_038762
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G462760

Location Chr04:116822877-116825947 (-)

Description Similar to At1g34470: Probable magnesium transporter NIPA3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g34470`	Acts as a Mg(2+) transporter.	No verified direct reference in this release
`At4g09640`	Acts as a Mg(2+) transporter.	No verified direct reference in this release
`At1g71900`	Acts as a Mg(2+) transporter.	No verified direct reference in this release
`At4g13800`	Acts as a Mg(2+) transporter.	No verified direct reference in this release
`At3g23870`	Acts as a Mg(2+) transporter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038762 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0015693 magnesium ion transport Biological Process

GO:0051607 defense response to virus Biological Process

GO:0005769 early endosome Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0015095 magnesium ion transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G34470

ath:AT1G71900

ath:AT2G21120

ath:AT4G09640

ath:AT4G13800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.421

Rank 1 · TkA04G462760 · TK1151

Cell membrane0.270

Rank 2 · TkA04G462760 · TK1151

Cytoplasm0.243

Rank 3 · TkA04G462760 · TK1151

Golgi apparatus0.159

Rank 4 · TkA04G462760 · TK1151

Endoplasmic reticulum0.104

Rank 5 · TkA04G462760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05653Mg_trans_NIPA16-308 aa

PF00892EamA19-133 aa

PF27291AF_145785-105 aa

PF27291AF_1457159-201 aa

PF00892EamA180-273 aa

PF08653DASH_Dam1236-267 aa

PF27291AF_1457260-302 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G462760	`PF05653`	Mg_trans_NIPA	16	308	6.8e-134	446.4
TkA04G462760	`PF00892`	EamA	19	133	2.5e-05	25.3
TkA04G462760	`PF27291`	AF_1457	85	105	7.7	7.5
TkA04G462760	`PF27291`	AF_1457	159	201	7.7	7.5
TkA04G462760	`PF00892`	EamA	180	273	2.5e-05	25.3
TkA04G462760	`PF08653`	DASH_Dam1	236	267	0.25	11.9
TkA04G462760	`PF27291`	AF_1457	260	302	7.7	7.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LNK7`	Arabidopsis thaliana	sp\|Q9LNK7\|NIPA3_ARATH Probable magnesium transporter NIPA3	80.600%	Swiss-Prot	High
`F4JKQ7`	Arabidopsis thaliana	sp\|F4JKQ7\|NIPA5_ARATH Probable magnesium transporter NIPA5	76.000%	Swiss-Prot	High
`Q94AH3`	Arabidopsis thaliana	sp\|Q94AH3\|NIPA4_ARATH Probable magnesium transporter NIPA4	76.000%	Swiss-Prot	High
`B3LFA3`	Arabidopsis thaliana	sp\|B3LFA3\|NIPA2_ARATH Probable magnesium transporter NIPA2	74.300%	Swiss-Prot	High
`Q9LIR9`	Arabidopsis thaliana	sp\|Q9LIR9\|NIPA1_ARATH Probable magnesium transporter NIPA1	73.000%	Swiss-Prot	High

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