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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G462550
Reference: TK1151 Chr: Chr04 Coordinates: 116746865-116750217 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1910 bp · TkA04G462550|TK1151|cDNA

TTTAACCCCTTGGTAAATTGTCTTCAACCCAATCCCTGTCGTTTCCCTCTCATTCCAAGAAAGTTCAGTCTATTTTTAGATATTCTCTCTCCAATCCATAAACAATCCCGATTTCTTTAGAATCTCTCTCTCCTACAGATTCCATAGATGCACAAATGCACGCACTTCTCTCTTTTGCAATCGGTTTGCATGTCCTTTCATAACCTGTTCTTTTAATAATCCCCCGCAATCCAACATACTTGTCACTAAAATCATCCCTA...

CDS

Download CDS FASTA

1113 bp · TkA04G462550|TK1151|CDS

ATGGACAAGTACGAGCTTGTGAAGGATATAGGATCTGGGAATTTTGGCGTTGCCAGGTTGATGAGGAACAAGGTCACCAAAGAGCTTGTTGCCATGAAATATATAGAAAGAGGGCATAAGATTGATGAAAATGTTGCCCGAGAGATCATAAATCACAGATCGCTTCGTCACCCGAATATAATTCGGTTTAGAGAGGTGGTGCTGACTCCCACCCATCTTGCTATTGTGATGGAGTATGCTGCTGGAGGGGAGCTTTTTGA...

Protein

Download Protein FASTA

370 aa · TkA04G462550|TK1151|PROTEIN

MDKYELVKDIGSGNFGVARLMRNKVTKELVAMKYIERGHKIDENVAREIINHRSLRHPNIIRFREVVLTPTHLAIVMEYAAGGELFDRICNAGRFSEDEARYFFQQLISGVHYCHFMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTIHRIMAVQYKIPDYVHISQDCRHLLSRIFVAGASRRINLKEIKSHPWF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G462550
TK1151 IDTkA04G462550
OH-1004 IDLXL04_038754
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)93.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G462550
LocationChr04:116746865-116750217 (-)
DescriptionSimilar to SRK2B: Serine/threonine-protein kinase SRK2B
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g10940 Serine/threonine-protein kinase SRK2A. No verified direct reference in this release
At1g60940 Serine/threonine-protein kinase SRK2B. No verified direct reference in this release
At5g63650 Serine/threonine-protein kinase SRK2H. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0432000 May play a role in signal transduction of hyperosmotic response. No verified direct reference in this release
Os02g0551100 May play a role in signal transduction of hyperosmotic response (Probable). No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038754 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006468 protein phosphorylation Biological Process
GO:0006970 response to osmotic stress Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0048527 lateral root development Biological Process
GO:0080022 primary root development Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G10940
ath:AT1G60940
ath:AT5G63650
dosa:Os02g0551100
dosa:Os04g0432000
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.549
Rank 1 · TkA04G462550 · TK1151
Nucleus0.472
Rank 2 · TkA04G462550 · TK1151
Cell membrane0.184
Rank 3 · TkA04G462550 · TK1151
Mitochondrion0.050
Rank 4 · TkA04G462550 · TK1151
Endoplasmic reticulum0.046
Rank 5 · TkA04G462550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase4-260 aa
PF07714PK_Tyr_Ser-Thr5-256 aa
PF11705RNA_pol_3_Rpc31250-355 aa
PF04889Cwf_Cwc_15262-356 aa
PF15336Auts2270-357 aa
PF10846DUF2722272-354 aa
PF09849DUF2076287-354 aa
PF04931DNA_pol_phi289-360 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G462550PF00069Pkinase42606.2e-70236.3
TkA04G462550PF07714PK_Tyr_Ser-Thr52565.8e-31108.4
TkA04G462550PF11705RNA_pol_3_Rpc312503550.0004920.9
TkA04G462550PF04889Cwf_Cwc_152623560.01316.0
TkA04G462550PF15336Auts22703571.110.0
TkA04G462550PF10846DUF27222723540.1212.4
TkA04G462550PF09849DUF20762873543.88.2
TkA04G462550PF04931DNA_pol_phi2893600.1311.1
TkA04G462550PF09507CDC273173570.3710.9
TkA04G462550PF12226Astro_capsid_p3173570.749.6
TkA04G462550PF02724CDC453193570.04312.8
TkA04G462550PF24181TPR_TTI1_C3193595.17.4
TkA04G462550PF30130VID28_C3203641.58.3
TkA04G462550PF05132RNA_pol_Rpc43203542.69.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P43291Arabidopsis thalianasp|P43291|SRK2A_ARATH Serine/threonine-protein kinase SRK2A84.300%Swiss-ProtHigh
Q9C958Arabidopsis thalianasp|Q9C958|SRK2B_ARATH Serine/threonine-protein kinase SRK2B87.600%Swiss-ProtHigh
Q9FFP9Arabidopsis thalianasp|Q9FFP9|SRK2H_ARATH Serine/threonine-protein kinase SRK2H84.000%Swiss-ProtHigh
Q7XQP4Oryza sativa subsp. japonicasp|Q7XQP4|SAPK7_ORYSJ Serine/threonine-protein kinase SAPK781.900%Swiss-ProtHigh
Q6ZI44Oryza sativa subsp. japonicasp|Q6ZI44|SAPK6_ORYSJ Serine/threonine-protein kinase SAPK680.200%Swiss-ProtHigh

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