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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G461440
Reference: TK1151 Chr: Chr04 Coordinates: 116386252-116387790 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1539 bp · TkA04G461440|TK1151|cDNA

ATGAAATGGCGGAATTTAACCTCACAAAATTCAATCTTGATGGCACTTTTACACCCACTTCGTTTTCCATCCACTCCGTCACCATCATCTTCTTCTTATGCACCTATTTTCCAGTTCTTGACTGGCTTAAACCTTCTACATTTAGGCCAGCAGATCCACGCCCATTTGATTCTCAGGGGACTTAAACCCAACTCATTCCTCGGCGCAAAGATGGTCGCAATGTACGCTAGCTCAGGTGATATCGACTCCGCCATTGTTCT...

CDS

Download CDS FASTA

1539 bp · TkA04G461440|TK1151|CDS

ATGAAATGGCGGAATTTAACCTCACAAAATTCAATCTTGATGGCACTTTTACACCCACTTCGTTTTCCATCCACTCCGTCACCATCATCTTCTTCTTATGCACCTATTTTCCAGTTCTTGACTGGCTTAAACCTTCTACATTTAGGCCAGCAGATCCACGCCCATTTGATTCTCAGGGGACTTAAACCCAACTCATTCCTCGGCGCAAAGATGGTCGCAATGTACGCTAGCTCAGGTGATATCGACTCCGCCATTGTTCT...

Protein

Download Protein FASTA

512 aa · TkA04G461440|TK1151|PROTEIN

MKWRNLTSQNSILMALLHPLRFPSTPSPSSSSYAPIFQFLTGLNLLHLGQQIHAHLILRGLKPNSFLGAKMVAMYASSGDIDSAIVLFDCIRRNASTLLYNSIIRACSLYGLSERSIGIYLDMNSVGVPGDYFTFPFVLKSCASLCNLGFGKCVHGKSLRSGLESDFYVATSLIDFYVKCAELHDAHKLFDQMPVKDVSSWNALISGHMKNGMVHIAENLFSRMPNNNKNIVTWTTMISGYTQNSLPNQALQLFDKMTND...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G461440
TK1151 IDTkA04G461440
OH-1004 IDLXL04_032129
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)37.000
Protein coverage (%)TK1151 94.531 / OH-1004 68.567
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G461440
LocationChr04:116386252-116387790 (+)
DescriptionSimilar to PCMP-H28: Pentatricopeptide repeat-containing protein At4g21065
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g46790 Required for the intergenic processing between chloroplast rsp7 and ndhB transcripts. No verified direct reference in this release
At5g56310 Pentatricopeptide repeat-containing protein At5g56310. No verified direct reference in this release
At1g20230 Pentatricopeptide repeat-containing protein At1g20230. No verified direct reference in this release
At2g20540 Pentatricopeptide repeat-containing protein At2g20540. No verified direct reference in this release
At3g49142 Putative pentatricopeptide repeat-containing protein At3g49142. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032129 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT3G12770
ath:AT4G21065
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.603
Rank 1 · TkA04G461440 · TK1151
Plastid0.220
Rank 2 · TkA04G461440 · TK1151
Nucleus0.047
Rank 3 · TkA04G461440 · TK1151
Cytoplasm0.030
Rank 4 · TkA04G461440 · TK1151
Cell membrane0.004
Rank 5 · TkA04G461440 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23276TPR_2448-98 aa
PF29070MSC6_N52-84 aa
PF01535PPR71-93 aa
PF13041PPR_271-90 aa
PF12854PPR_173-90 aa
PF10602RPN773-97 aa
PF23241HAT_PRP39_C95-110 aa
PF13041PPR_297-143 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G461440PF23276TPR_2448980.0001222.7
TkA04G461440PF29070MSC6_N52849e-1142.2
TkA04G461440PF01535PPR71933.6e-47156.1
TkA04G461440PF13041PPR_271901.1e-42144.7
TkA04G461440PF12854PPR_173901.5e-29102.1
TkA04G461440PF10602RPN773970.1712.3
TkA04G461440PF23241HAT_PRP39_C951100.003818.0
TkA04G461440PF13041PPR_2971431.1e-42144.7
TkA04G461440PF13812PPR_3991421.3e-1557.9
TkA04G461440PF01535PPR1001273.6e-47156.1
TkA04G461440PF12854PPR_11001061.5e-29102.1
TkA04G461440PF23276TPR_241001210.0001222.7
TkA04G461440PF13812PPR_31601941.3e-1557.9
TkA04G461440PF01535PPR1711963.6e-47156.1
TkA04G461440PF13041PPR_21711981.1e-42144.7
TkA04G461440PF12854PPR_11711931.5e-29102.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9STF3Arabidopsis thalianasp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein CRR2, chloroplastic36.100%Swiss-ProtMedium
Q9FMA1Arabidopsis thalianasp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g5631040.600%Swiss-ProtMedium
Q9LNU6Arabidopsis thalianasp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g2023036.000%Swiss-ProtMedium
Q9SIL5Arabidopsis thalianasp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g2054040.700%Swiss-ProtMedium
P0C899Arabidopsis thalianasp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g4914234.300%Swiss-ProtMedium

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