TkA04G461400 | RubberDandelionOmics

Gene overview

TkA04G461400

Reference: TK1151 Chr: Chr04 Coordinates: 116376582-116378366 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1221 bp · TkA04G461400|TK1151|cDNA

GAAGAACAATAATTTTTGTGTCTAGCATGAAAACTTCTTTGTCTGAAATAAACAACTTGAGTGATAGTATCTTGGTTCTTGGTAGTGATTTTTGTGTTTTATTCTATAGTTTGATCAAAGATATCATATATATCATTAATTTGTTTATATTCTGAGAAAGTTTATTAGTGCAGTGTGGTATCCACTTGAACTCTTTAGGGTTGCAAATTGAGTTGAGATCTGATCAGATTGGTCACTTTTGAATTAATAAGATGGCCTTA...

CDS

Download CDS FASTA

801 bp · TkA04G461400|TK1151|CDS

ATGGCCTTAAACCTTAAAAAATTATTGTTGATCTTGGTGTCGATATGTTTGTTTGTAAAATGCTCTTCATGTTCTAACCAAACAGTACTCCCTGCTAAAACTAGCAATCTTGGCGGTTTTAAACCAGCTTTAGCAACGTGGTATGGAGAAAGTCATGGTGCTGGAAGTGGAGGAGCTTGTGGATGGGCTAATGATGTGAAATCACCTCCATTCTCATCCATGATAGCGGCAGGAAATGCCAACTTGTTTTTGAAAGGAAA...

Protein

Download Protein FASTA

266 aa · TkA04G461400|TK1151|PROTEIN

MALNLKKLLLILVSICLFVKCSSCSNQTVLPAKTSNLGGFKPALATWYGESHGAGSGGACGWANDVKSPPFSSMIAAGNANLFLKGKGCGTCYQVLCTREPYCSRNPITVTITDECPGSCNKVPFAFDLSGTAFGAMSNPGQADNLRNLGQVNIQYRRVSCNYGSTQIAFKIDPKVNPYWFAMAVEFCEGDGDLDAVEIAANGSQEFRCMENIWGAVWAANIDPSFRGPFSFRLISRKNEAVVAFRALPYGFVPGQTYYS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G461400`
TK1151 ID	TkA04G461400
OH-1004 ID	LXL04_038747
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G461400

Location Chr04:116376582-116378366 (-)

Description Similar to EXPB15: Expansin-B15

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g45110`	May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans.	No verified direct reference in this release
`UniProt: Q6IVU7`	May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0552000`	May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans.	No verified direct reference in this release
`Os02g0658600`	May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans.	No verified direct reference in this release
`Os05g0246300`	May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038747 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009653 anatomical structure morphogenesis Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0009828 plant-type cell wall loosening Biological Process

GO:0005576 extracellular region Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT2G45110

dosa:Os02g0658600

dosa:Os04g0552000

dosa:Os05g0246300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.329

Rank 1 · TkA04G461400 · TK1151

Lysosome / Vacuole0.266

Rank 2 · TkA04G461400 · TK1151

Cytoplasm0.116

Rank 3 · TkA04G461400 · TK1151

Endoplasmic reticulum0.105

Rank 4 · TkA04G461400 · TK1151

Plastid0.084

Rank 5 · TkA04G461400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11331Zn_ribbon_1218-35 aa

PF22514EXPB1_D143-63 aa

PF03330DPBB_145-58 aa

PF22514EXPB1_D145-162 aa

PF29515Expansin_N54-150 aa

PF03330DPBB_176-156 aa

PF11331Zn_ribbon_1289-96 aa

PF11331Zn_ribbon_12118-123 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G461400	`PF11331`	Zn_ribbon_12	18	35	5.6	7.5
TkA04G461400	`PF22514`	EXPB1_D1	43	63	0.00021	22.4
TkA04G461400	`PF03330`	DPBB_1	45	58	2.8e-15	57.0
TkA04G461400	`PF22514`	EXPB1_D1	45	162	0.00021	22.4
TkA04G461400	`PF29515`	Expansin_N	54	150	1.6e-05	25.7
TkA04G461400	`PF03330`	DPBB_1	76	156	2.8e-15	57.0
TkA04G461400	`PF11331`	Zn_ribbon_12	89	96	5.6	7.5
TkA04G461400	`PF11331`	Zn_ribbon_12	118	123	5.6	7.5
TkA04G461400	`PF01357`	Expansin_C	168	249	2.1e-15	57.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SHD1`	Arabidopsis thaliana	sp\|Q9SHD1\|EXPB4_ARATH Expansin-B4	46.700%	Swiss-Prot	Medium
`Q6IVU7`	Arabidopsis thaliana	sp\|Q6IVU7\|EXPB6_ARATH Expansin-B6	48.300%	Swiss-Prot	Medium
`Q7XT40`	Oryza sativa subsp. japonica	sp\|Q7XT40\|EXB15_ORYSJ Expansin-B15	51.600%	Swiss-Prot	High
`Q6H677`	Oryza sativa subsp. japonica	sp\|Q6H677\|EXB14_ORYSJ Putative expansin-B14	48.700%	Swiss-Prot	Medium
`Q5W6Z9`	Oryza sativa subsp. japonica	sp\|Q5W6Z9\|EXB18_ORYSJ Expansin-B18	48.900%	Swiss-Prot	Medium

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