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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G458230
Reference: TK1151 Chr: Chr04 Coordinates: 115567487-115572678 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2738 bp · TkA04G458230|TK1151|cDNA

TTGCAATATAATTAAGTGGATGCGGCGTTAAACCCTGGTGGCGTCTAAAACCCTGTGTTTTCCGAGAGCGTAGGGCGATGGCCATAGACAGGAATGTAATCGAAGAAGAAGGATGCCTCCATCGTTTCTACAAAATTGTTCTCGGTTGGGACTATCTCCGCCTCCTCAAAGAATCCTCCAAAAAAAACAAAAACGCTCCGAATGCAAAGGATTTAGGTTTGAAGCAAGTAAAGGACACGTATAAAGATGTAGATGATTAC...

CDS

Download CDS FASTA

2451 bp · TkA04G458230|TK1151|CDS

ATGGCCATAGACAGGAATGTAATCGAAGAAGAAGGATGCCTCCATCGTTTCTACAAAATTGTTCTCGGTTGGGACTATCTCCGCCTCCTCAAAGAATCCTCCAAAAAAAACAAAAACGCTCCGAATGCAAAGGATTTAGGTTTGAAGCAAGTAAAGGACACGTATAAAGATGTAGATGATTACCTTGCCACATTTGAGCCTCTCTTATTTGAAGAAGTTAAAGCTCAAATCGTACAAGGCAAAGATGAGGAAGAAGAAAC...

Protein

Download Protein FASTA

816 aa · TkA04G458230|TK1151|PROTEIN

MAIDRNVIEEEGCLHRFYKIVLGWDYLRLLKESSKKNKNAPNAKDLGLKQVKDTYKDVDDYLATFEPLLFEEVKAQIVQGKDEEEETEWKMGIAIECHETDGFHLPEVFGEDWGSVSQNDLLLLTKKKFGDDKELPTTYAFALVEHRLPDKIRLRMQLDGEIKRVDKDDFKTSKRLMTMRSLIGEQNKPWSIMKICSLSTIAREYVALRSISFLPYKDVILSASDDSVHNSEDQAWKISKPLMEFIQSNHNATQLEAIRA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G458230
TK1151 IDTkA04G458230
OH-1004 IDLXL04_008577
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)32.000
Protein coverage (%)TK1151 93.873 / OH-1004 38.441
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G458230
LocationChr04:115567487-115572678 (-)
DescriptionSimilar to SEN1: Helicase SEN1 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g15570 Probable helicase that may regulate RNA molecules involved in nucleolar organization and pollen tube guidance.
Attractive and repulsive interactions between female and male gametophytes in Arabidopsis pollen tube guidance.2000 · DOI: 10.1242/dev.127.20.4511
MAA3 (MAGATAMA3) helicase gene is required for female gametophyte development and pollen tube guidance in Arabidopsis thaliana.2008 · DOI: 10.1093/pcp/pcn130

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_008577 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006283 transcription-coupled nucleotide-excision repair Biological Process
GO:0006353 DNA-templated transcription termination Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0006364 rRNA processing Biological Process
GO:0006369 termination of RNA polymerase II transcription Biological Process
GO:0006386 termination of RNA polymerase III transcription Biological Process
GO:0006397 mRNA processing Biological Process
GO:0006399 tRNA metabolic process Biological Process
GO:0006974 DNA damage response Biological Process
GO:0008033 tRNA processing Biological Process
GO:0009553 embryo sac development Biological Process
GO:0009875 pollen-pistil interaction Biological Process
KEGG gene cross-reference
ath:AT4G15570
sce:YLR430W
spo:2540523
spo:2541556
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.618
Rank 1 · TkA04G458230 · TK1151
Cytoplasm0.318
Rank 2 · TkA04G458230 · TK1151
Mitochondrion0.069
Rank 3 · TkA04G458230 · TK1151
Cell membrane0.046
Rank 4 · TkA04G458230 · TK1151
Peroxisome0.037
Rank 5 · TkA04G458230 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00580UvrD-helicase46-67 aa
PF00437T2SSE143-161 aa
PF13989YejG144-195 aa
PF04851ResIII151-202 aa
PF20720nSTAND3162-190 aa
PF00437T2SSE244-299 aa
PF13481AAA_25249-296 aa
PF13086AAA_11250-436 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G458230PF00580UvrD-helicase46670.006316.9
TkA04G458230PF00437T2SSE1431610.05612.8
TkA04G458230PF13989YejG1441950.1813.0
TkA04G458230PF04851ResIII1512020.002318.6
TkA04G458230PF20720nSTAND31621900.0005520.4
TkA04G458230PF00437T2SSE2442990.05612.8
TkA04G458230PF13481AAA_252492960.05913.7
TkA04G458230PF13086AAA_112504364.3e-58197.8
TkA04G458230PF13604AAA_302512879.6e-0936.0
TkA04G458230PF00580UvrD-helicase2512920.006316.9
TkA04G458230PF04851ResIII2522910.002318.6
TkA04G458230PF00270DEAD2522890.01615.6
TkA04G458230PF13245AAA_192542907e-0833.4
TkA04G458230PF13191AAA_162552920.0216.1
TkA04G458230PF20720nSTAND32563060.0005520.4
TkA04G458230PF12775AAA_72572890.06713.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
B6SFA4Arabidopsis thalianasp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 361.400%Swiss-ProtHigh

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