TkA04G450810 | RubberDandelionOmics

Gene overview

TkA04G450810

Reference: TK1151 Chr: Chr04 Coordinates: 113557797-113558444 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

336 bp · TkA04G450810|TK1151|cDNA

ATGGTGGAGCTTCGGGCTCTTGAGCGGAAGTTTGGCCCGTTTTCCGGGTCTGCTAATGGGAAAGACCCGGTTGGAGATAAACGGGCCAGGGTTGAGACACTGAGGGCCAAAACGGAAGAAGAGAGGAGTAAGTTTGAGAAATCGATTGGGGTAACGAGAGCCATGACTTTGAGTAATTTGCAAATGGGATTACCGCATGTTTTTCAAGCTGTACGGGTTTTGCTAATGTGTGGACGCATGCATTTGAGTCCGTTTACAAC...

CDS

Download CDS FASTA

336 bp · TkA04G450810|TK1151|CDS

ATGGTGGAGCTTCGGGCTCTTGAGCGGAAGTTTGGCCCGTTTTCCGGGTCTGCTAATGGGAAAGACCCGGTTGGAGATAAACGGGCCAGGGTTGAGACACTGAGGGCCAAAACGGAAGAAGAGAGGAGTAAGTTTGAGAAATCGATTGGGGTAACGAGAGCCATGACTTTGAGTAATTTGCAAATGGGATTACCGCATGTTTTTCAAGCTGTACGGGTTTTGCTAATGTGTGGACGCATGCATTTGAGTCCGTTTACAAC...

Protein

Download Protein FASTA

111 aa · TkA04G450810|TK1151|PROTEIN

MVELRALERKFGPFSGSANGKDPVGDKRARVETLRAKTEEERSKFEKSIGVTRAMTLSNLQMGLPHVFQAVRVLLMCGRMHLSPFTTMQIVPRYNEALPGPLAGLLVFVVL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G450810`
TK1151 ID	TkA04G450810
OH-1004 ID	LXL04_013827
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	97.200
Protein coverage (%)	TK1151 63.964 / OH-1004 10.991 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G450810

Location Chr04:113557797-113558444 (+)

Description Similar to APSR1: Protein ALTERED PHOSPHATE STARVATION RESPONSE 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g51290`	Required for the coordination of cell differentiation and cell elongation in the root tip.	No verified direct reference in this release
`At3g60320`	Required for nitrate signaling.	The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators.2016 · DOI: 10.1105/tpc.15.00567

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013827 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0010073 meristem maintenance Biological Process

GO:0010167 response to nitrate Biological Process

GO:0015706 nitrate transmembrane transport Biological Process

GO:0030154 cell differentiation Biological Process

GO:0071249 cellular response to nitrate Biological Process

GO:0071705 nitrogen compound transport Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT3G51290

ath:AT3G60320

dosa:Os10g0562700

osa:4349394

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.499

Rank 1 · TkA04G450810 · TK1151

Plastid0.134

Rank 2 · TkA04G450810 · TK1151

Cytoplasm0.120

Rank 3 · TkA04G450810 · TK1151

Nucleus0.079

Rank 4 · TkA04G450810 · TK1151

Peroxisome0.075

Rank 5 · TkA04G450810 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23406ZNF380_CC22-50 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G450810	`PF23406`	ZNF380_CC	22	50	0.19	13.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`A0A178VBJ0`	Arabidopsis thaliana	sp\|A0A178VBJ0\|APSR1_ARATH Protein ALTERED PHOSPHATE STARVATION RESPONSE 1	60.600%	Swiss-Prot	Medium
`Q93YU8`	Arabidopsis thaliana	sp\|Q93YU8\|NRG2_ARATH Nitrate regulatory gene2 protein	42.200%	Swiss-Prot	Medium

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