TkA04G443980 | RubberDandelionOmics

Gene overview

TkA04G443980

Reference: TK1151 Chr: Chr04 Coordinates: 111933259-111933720 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

374 bp · TkA04G443980|TK1151|cDNA

CATCTCTCTCTCTCTCTCTCTCTCTAGATTATATCTCTCCCTGAAAACAACTAATAATGGGACGATCCAACTATGAACTTGGCGCACTTGCTCTTATAATTTCAATTCTAACGGTAGCGGCATCGGCAGGAAGTTTTCACGATGATATTGACATCACATTTGGAGGCGAACGTGCTAAAATTCTGAATGGTGGTCAAGATCTTTCTCTTTCTCTGGACCAATACTCTGGCGCTGGTTTCCAGTCAAAGCACGAGTACCTC...

CDS

Download CDS FASTA

318 bp · TkA04G443980|TK1151|CDS

ATGGGACGATCCAACTATGAACTTGGCGCACTTGCTCTTATAATTTCAATTCTAACGGTAGCGGCATCGGCAGGAAGTTTTCACGATGATATTGACATCACATTTGGAGGCGAACGTGCTAAAATTCTGAATGGTGGTCAAGATCTTTCTCTTTCTCTGGACCAATACTCTGGCGCTGGTTTCCAGTCAAAGCACGAGTACCTCTTCGGAAGATTCGACATGCAACTCAAACTCGTACCAGGCAACTCGGCTGGCACTGT...

Protein

Download Protein FASTA

106 aa · TkA04G443980|TK1151|PROTEIN

MGRSNYELGALALIISILTVAASAGSFHDDIDITFGGERAKILNGGQDLSLSLDQYSGAGFQSKHEYLFGRFDMQLKLVPGNSAGTVTTFYLSSKGAGHDEIDFEF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G443980`
TK1151 ID	TkA04G443980
OH-1004 ID	LXL04_038583
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 36.934 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G443980

Location Chr04:111933259-111933720 (-)

Description Similar to Xyloglucan endotransglucosylase/hydrolase 2

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g14130`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	Distinct catalytic capacities of two aluminium-repressed Arabidopsis thaliana xyloglucan endotransglucosylase/hydrolases, XTH15 and XTH31, heterologously produced in Pichia.2015 · DOI: 10.1016/j.phytochem.2014.09.020
`At3g23730`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release
`At4g25820`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	In vitro activities of four xyloglucan endotransglycosylases from Arabidopsis.1999 · DOI: 10.1046/j.1365-313x.1999.00459.x

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038583 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009408 response to heat Biological Process

GO:0009409 response to cold Biological Process

GO:0009612 response to mechanical stimulus Biological Process

GO:0009664 plant-type cell wall organization Biological Process

GO:0009733 response to auxin Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0009835 fruit ripening Biological Process

GO:0010218 response to far red light Biological Process

GO:0010411 xyloglucan metabolic process Biological Process

GO:0042546 cell wall biogenesis Biological Process

GO:0071456 cellular response to hypoxia Biological Process

KEGG gene cross-reference

ath:AT3G23730

ath:AT4G14130

ath:AT5G57560

gmx:547802

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.358

Rank 1 · TkA04G443980 · TK1151

Lysosome / Vacuole0.313

Rank 2 · TkA04G443980 · TK1151

Cytoplasm0.126

Rank 3 · TkA04G443980 · TK1151

Endoplasmic reticulum0.116

Rank 4 · TkA04G443980 · TK1151

Golgi apparatus0.077

Rank 5 · TkA04G443980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00722Glyco_hydro_1628-106 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G443980	`PF00722`	Glyco_hydro_16	28	106	2.3e-21	76.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q38911`	Arabidopsis thaliana	sp\|Q38911\|XTH15_ARATH Xyloglucan endotransglucosylase/hydrolase protein 15	61.700%	Swiss-Prot	High
`Q8LG58`	Arabidopsis thaliana	sp\|Q8LG58\|XTH16_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 16	58.500%	Swiss-Prot	High
`Q9ZSU4`	Arabidopsis thaliana	sp\|Q9ZSU4\|XTH14_ARATH Xyloglucan endotransglucosylase/hydrolase protein 14	62.900%	Swiss-Prot	High

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