TkA04G435100 | RubberDandelionOmics

Gene overview

TkA04G435100

Reference: TK1151 Chr: Chr04 Coordinates: 109743560-109744033 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

432 bp · TkA04G435100|TK1151|cDNA

ATGTACTTCTACCTCCCAGATGAAAAAACCGGCCTCGCACCTCTATTACAGAAAATCAGTTCCGAATCAGACTTCCTAGACCGCCACATCCCACGCCAAAAAGTAGAAATAGGGCAATTTCTTCTCCTGAAATTCAAAATCTCATACGGATTCGAAGCTTCTGAGAGGTTAAAGGAACTAGGTCTAGTATCCCCCTTCACCACTGGAGAAGGTCCGACAGGCATTCATCATAAATCGTTTGTGGAAGTGAATGAAGAAGG...

CDS

Download CDS FASTA

432 bp · TkA04G435100|TK1151|CDS

ATGTACTTCTACCTCCCAGATGAAAAAACCGGCCTCGCACCTCTATTACAGAAAATCAGTTCCGAATCAGACTTCCTAGACCGCCACATCCCACGCCAAAAAGTAGAAATAGGGCAATTTCTTCTCCTGAAATTCAAAATCTCATACGGATTCGAAGCTTCTGAGAGGTTAAAGGAACTAGGTCTAGTATCCCCCTTCACCACTGGAGAAGGTCCGACAGGCATTCATCATAAATCGTTTGTGGAAGTGAATGAAGAAGG...

Protein

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143 aa · TkA04G435100|TK1151|PROTEIN

MYFYLPDEKTGLAPLLQKISSESDFLDRHIPRQKVEIGQFLLLKFKISYGFEASERLKELGLVSPFTTGEGPTGIHHKSFVEVNEEGTEAGAASAAVVMLRSLMTDEKVDFMADHPFVFVIREDITGVVLFIGQVVDPREACS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G435100`
TK1151 ID	TkA04G435100
OH-1004 ID	LXL04_030413
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	83.900
Protein coverage (%)	TK1151 98.601 / OH-1004 18.788 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G435100

Location Chr04:109743560-109744033 (-)

Description Similar to At1g47710: Serpin-ZX

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g47710`	Inhibits metacaspase-9 (MC9) cysteine protease.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0610650`	Probable serine protease inhibitor.	No verified direct reference in this release
`Os03g0610800`	Probable serine protease inhibitor.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_030413 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005576 extracellular region Cellular Component

GO:0005615 extracellular space Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004867 serine-type endopeptidase inhibitor activity Molecular Function

GO:0004869 cysteine-type endopeptidase inhibitor activity Molecular Function

KEGG gene cross-reference

ath:AT1G47710

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.595

Rank 1 · TkA04G435100 · TK1151

Cytoplasm0.273

Rank 2 · TkA04G435100 · TK1151

Endoplasmic reticulum0.059

Rank 3 · TkA04G435100 · TK1151

Lysosome / Vacuole0.044

Rank 4 · TkA04G435100 · TK1151

Nucleus0.040

Rank 5 · TkA04G435100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00079Serpin1-138 aa

PF25003DUF778130-84 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G435100	`PF00079`	Serpin	1	138	1.9e-26	93.9
TkA04G435100	`PF25003`	DUF7781	30	84	0.12	12.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9S7T8`	Arabidopsis thaliana	sp\|Q9S7T8\|SPZX_ARATH Serpin-ZX	55.800%	Swiss-Prot	High
`Q75H81`	Oryza sativa subsp. japonica	sp\|Q75H81\|SPZXA_ORYSJ Serpin-ZXA	54.600%	Swiss-Prot	High
`Q10GX0`	Oryza sativa subsp. japonica	sp\|Q10GX0\|SPZXB_ORYSJ Serpin-ZXB	53.900%	Swiss-Prot	High

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