TkA04G434960 | RubberDandelionOmics

Gene overview

TkA04G434960

Reference: TK1151 Chr: Chr04 Coordinates: 109711568-109714074 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1672 bp · TkA04G434960|TK1151|cDNA

AGCCAAAATAGCATATGTATCACGAGGCAATTATTTATCTTCATTGACAAAGATCATGGGGTCCAAAACCAATAAAGAAAGTTTGAAAAATACATGTGCTTTTTGAGATAAGACATAGACCCCCATTCACTTCTGGATCTTAAAAACCAATACACTTTCACTGAATACCAGAACCCAATCAATGAAGGCCCTCATCATTTTTCTTCTTCCATGCATTTTGCTGATCCTAGGAGATACAGCTCGAGCCCAAGACAATGGTG...

CDS

Download CDS FASTA

948 bp · TkA04G434960|TK1151|CDS

ATGAAGGCCCTCATCATTTTTCTTCTTCCATGCATTTTGCTGATCCTAGGAGATACAGCTCGAGCCCAAGACAATGGTGACAGCGTTGACCCTTATGCAACATTATTCAGTCCATACACTAAACAGGAATGGCGATCTTACCAACAAAAGAAGATAAATGAGGGACGAAAAACACAGTTAACTTTCAAGGTAACCTACGCAAATGGAACAAAAGTTAAGGGAGCAAAACTGTACATAAAGCAACTCTCTTCAGATTTCCA...

Protein

Download Protein FASTA

315 aa · TkA04G434960|TK1151|PROTEIN

MKALIIFLLPCILLILGDTARAQDNGDSVDPYATLFSPYTKQEWRSYQQKKINEGRKTQLTFKVTYANGTKVKGAKLYIKQLSSDFHWGCGMTRRILNNTAYKKWFASRFTAADFHNELKWYWNEPIQGQENYTDPDAMMKFADEHGIIVRGHTVLWDDVKYNLKWVKKLSPEKLLEAANKRVDSVVQRYKGRLIGWDVMNENLHHNFFEKRLGKNASSLFFNRVHKIDPKAILFMNEFNTTEHVNDEYAPPDRYLRKMK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G434960`
TK1151 ID	TkA04G434960
OH-1004 ID	LXL04_038499
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	99.000
Protein coverage (%)	TK1151 95.873 / OH-1004 68.864 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G434960

Location Chr04:109711568-109714074 (-)

Description Similar to At4g33820: Endo-1,4-beta-xylanase 5-like

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g33820`	Binds to and hydrolyzes insoluble and soluble xylan substrates.	No verified direct reference in this release
`At4g33810`	Binds to and hydrolyzes insoluble and soluble xylan substrates.	No verified direct reference in this release
`At2g14690`	Binds to and hydrolyzes insoluble and soluble xylan substrates.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038499 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0045493 xylan catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0031176 endo-1,4-beta-xylanase activity Molecular Function

KEGG gene cross-reference

ath:AT1G10050

ath:AT2G14690

ath:AT4G33810

ath:AT4G33820

cth:Cthe_2119

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.546

Rank 1 · TkA04G434960 · TK1151

Lysosome / Vacuole0.116

Rank 2 · TkA04G434960 · TK1151

Cytoplasm0.091

Rank 3 · TkA04G434960 · TK1151

Plastid0.064

Rank 4 · TkA04G434960 · TK1151

Endoplasmic reticulum0.058

Rank 5 · TkA04G434960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00331Glyco_hydro_1084-302 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G434960	`PF00331`	Glyco_hydro_10	84	302	3.4e-29	102.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84WT5`	Arabidopsis thaliana	sp\|Q84WT5\|XYN5L_ARATH Endo-1,4-beta-xylanase 5-like	45.200%	Swiss-Prot	Medium
`A0A1P8B8F8`	Arabidopsis thaliana	sp\|A0A1P8B8F8\|XYN5_ARATH Endo-1,4-beta-xylanase 5	44.500%	Swiss-Prot	Medium
`Q680B7`	Arabidopsis thaliana	sp\|Q680B7\|XYN4_ARATH Endo-1,4-beta-xylanase 4	45.200%	Swiss-Prot	Medium

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