Gene Card
Gene overview
cDNA / CDS / Protein Sequences
378 bp · TkA04G430800|TK1151|cDNA
CCCAACACTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCAATTAAGATCGGTTTTTAACCATTGTTTTATAGTTTATCTTTGGGAAATCTCCAAAAAAGTCCCTACATTTTGTCCTCATATTCGATTAAGTCCCTATATTTTTTTTATTAACAAAAAAGTCCCTACATTTTTATACATAGATTTGGTGAACGATTTTTGTAGTAAAAATTT...
378 bp · TkA04G430800|TK1151|CDS
CCCAACACTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCAATTAAGATCGGTTTTTAACCATTGTTTTATAGTTTATCTTTGGGAAATCTCCAAAAAAGTCCCTACATTTTGTCCTCATATTCGATTAAGTCCCTATATTTTTTTTATTAACAAAAAAGTCCCTACATTTTTATACATAGATTTGGTGAACGATTTTTGTAGTAAAAATTT...
Protein
Download Protein FASTA125 aa · TkA04G430800|TK1151|PROTEIN
PNTIYIYIYIYIYIYIYIYIYIYIYIYIYQLRSVFNHCFIVYLWEISKKVPTFCPHIRLSPYIFFINKKVPTFLYIDLVNDFCSKNLKIKAKNVNICRFWGLNCKQFVKFGDLIVNSLLNLGLNC
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA04G430800 |
|---|---|
| TK1151 ID | TkA04G430800 |
| OH-1004 ID | LXL04_008577 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 94.300 |
| Protein coverage (%) | TK1151 42.400 / OH-1004 2.388Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA04G430800 |
|---|---|
| Location | Chr04:108650783-108651160 (+) |
| Description | Similar to SEN1: Helicase SEN1 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006283 transcription-coupled nucleotide-excision repair Biological Process GO:0006353 DNA-templated transcription termination Biological Process GO:0006357 regulation of transcription by RNA polymerase II Biological Process GO:0006364 rRNA processing Biological Process GO:0006369 termination of RNA polymerase II transcription Biological Process GO:0006386 termination of RNA polymerase III transcription Biological Process GO:0006397 mRNA processing Biological Process GO:0006399 tRNA metabolic process Biological Process GO:0006974 DNA damage response Biological Process GO:0008033 tRNA processing Biological Process GO:0009553 embryo sac development Biological Process GO:0009875 pollen-pistil interaction Biological Process |
| KEGG gene cross-reference | ath:AT4G15570 sce:YLR430W spo:2540523 spo:2541556 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF10909DUF268278-104 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA04G430800 | PF10909 | DUF2682 | 78 | 104 | 0.024 | 15.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.