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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G425850
Reference: TK1151 Chr: Chr04 Coordinates: 107452845-107456988 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2306 bp · TkA04G425850|TK1151|cDNA

AATTTACTCGTCTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCATCCCTTATTCCTCCTCCTAACCTCACTGCCCTTTTCTTCTATCCATTCTCAAACGAAAAGCCATACCACAATGACCTCAGATGCTCTGATGAAACGATTCTATCGGTATCTTCATCATCCCACCGACTAAACGTCCCCAATTTTCACCCAACCACATACAAAAACAATCCATTTTGATCTGATGCAAGGTCAAAGGAGTATTATTGA...

CDS

Download CDS FASTA

1683 bp · TkA04G425850|TK1151|CDS

ATGCAAGGTCAAAGGAGTATTATTGACCCTTTCCCTGAATCGGTTGACCTTAACCAAGGGTCAAACTCCAGCAATACTAGCATGGATGAATCAGATGATTGGAACAACATGTTATCTCCAATTGAAAGACGATTATTAAACAATGATCTTTCCAGTGAGTTAAACTTCAATTGTGTGAATAATCCAAATGTTCATCATAACTTTAGAAGTTTCAGCAACTGGGATGTTGGAGAATCCAGCTCTAGACCAAGTTTACAACA...

Protein

Download Protein FASTA

560 aa · TkA04G425850|TK1151|PROTEIN

MQGQRSIIDPFPESVDLNQGSNSSNTSMDESDDWNNMLSPIERRLLNNDLSSELNFNCVNNPNVHHNFRSFSNWDVGESSSRPSLQQDQAIPNDDSRLKQHQHDDLSSSSLSCNHIPMNVNLNIGYGGTTNSDDDDGMGFMDLYKSGKRKALEGTTSGQPGQSLTLVNHVPVNHNEQSNTRTSSVQETSQTQFGIRGSVPYNLSSGNAPRCPNTTTSNRQILINEFLDQTSRNNPSNQQQQPPLMLQRNTNTHHFPFGSR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G425850
TK1151 IDTkA04G425850
OH-1004 IDLXL04_038412
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G425850
LocationChr04:107452845-107456988 (-)
DescriptionSimilar to MBR2: E3 ubiquitin-protein ligase MBR2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g34040 E3 ubiquitin-protein ligase that functions as a regulator of MED25 stability by targeting MED25 for degradation in a RING-H2- dependent way.
Proteasome-mediated turnover of Arabidopsis MED25 is coupled to the activation of FLOWERING LOCUS T transcription.2012 · DOI: 10.1104/pp.112.205500
At2g15530 E3 ubiquitin-protein ligase that functions as a regulator of MED25 stability by targeting MED25 for degradation in a RING-H2- dependent way.
Proteasome-mediated turnover of Arabidopsis MED25 is coupled to the activation of FLOWERING LOCUS T transcription.2012 · DOI: 10.1104/pp.112.205500
At5g42940 Probable E3 ubiquitin-protein ligase that may possess E3 ubiquitin ligase activity in vitro. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0648800 Probable E3 ubiquitin-protein ligase that functions downstream of HAL3 and is required for HAL3-regulated plant growth. No verified direct reference in this release
Os01g0667700 Probable E3 ubiquitin-protein ligase. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038412 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009845 seed germination Biological Process
GO:0009908 flower development Biological Process
GO:0010218 response to far red light Biological Process
GO:0010228 vegetative to reproductive phase transition of meristem Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
GO:0061659 ubiquitin-like protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT2G15530
ath:AT4G34040
ath:AT5G42940
dosa:Os01g0667700
dosa:Os04g0648800
osa:4326322
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.764
Rank 1 · TkA04G425850 · TK1151
Cytoplasm0.355
Rank 2 · TkA04G425850 · TK1151
Endoplasmic reticulum0.039
Rank 3 · TkA04G425850 · TK1151
Cell membrane0.034
Rank 4 · TkA04G425850 · TK1151
Lysosome / Vacuole0.024
Rank 5 · TkA04G425850 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17034zinc_ribbon_1697-116 aa
PF17122zf-C3H2C3105-116 aa
PF13639zf-RING_2110-116 aa
PF17123zf-RING_11111-116 aa
PF14634zf-RING_5111-116 aa
PF17034zinc_ribbon_16480-517 aa
PF13832zf-HC5HC2H_2488-542 aa
PF12678zf-rbx1506-554 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G425850PF17034zinc_ribbon_16971160.0315.2
TkA04G425850PF17122zf-C3H2C31051160.05514.2
TkA04G425850PF13639zf-RING_21101163.1e-1350.5
TkA04G425850PF17123zf-RING_111111161.7e-0628.3
TkA04G425850PF14634zf-RING_51111160.0002921.5
TkA04G425850PF17034zinc_ribbon_164805170.0315.2
TkA04G425850PF13832zf-HC5HC2H_24885420.511.3
TkA04G425850PF12678zf-rbx15065541.2e-1042.2
TkA04G425850PF17120zf-RING_165095510.01615.5
TkA04G425850PF13920zf-C3HC4_35115550.0005220.5
TkA04G425850PF29452FAR1_N5115550.1712.6
TkA04G425850PF13639zf-RING_25135543.1e-1350.5
TkA04G425850PF13923zf-C3HC4_25135532.5e-0834.3
TkA04G425850PF00097zf-C3HC45135533.1e-0730.8
TkA04G425850PF13445zf-RING_UBOX5135511.7e-0628.7
TkA04G425850PF17123zf-RING_115135401.7e-0628.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O49500Arabidopsis thalianasp|O49500|MBR2_ARATH E3 ubiquitin-protein ligase MBR256.000%Swiss-ProtLow
Q9ZQF9Arabidopsis thalianasp|Q9ZQF9|MBR1_ARATH E3 ubiquitin-protein ligase MBR154.100%Swiss-ProtLow
Q9FMM4Arabidopsis thalianasp|Q9FMM4|RHG1A_ARATH Probable E3 ubiquitin-protein ligase RHG1A58.500%Swiss-ProtLow
Q7XTV7Oryza sativa subsp. japonicasp|Q7XTV7|HIP1_ORYSJ Probable E3 ubiquitin-protein ligase HIP160.500%Swiss-ProtLow
Q5QLR5Oryza sativa subsp. japonicasp|Q5QLR5|ZFP1_ORYSJ Probable E3 ubiquitin-protein ligase ZFP150.800%Swiss-ProtLow

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