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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G420470
Reference: TK1151 Chr: Chr04 Coordinates: 105955216-105957525 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1809 bp · TkA04G420470|TK1151|cDNA

TAAGATCGAAGGTAATTTGTGTCATTTAATATTTTGGAAAAGAGCTTAAAATTTTCAAAGACAGTCTCACTCACAGTAACCATTTCCACCCTCATTCCACCACCGCCATTTCTCCGGCGACCAACAACGCTTGCACCGGTACATCATGGCTCCCGCAAAGCCAAGCATTCGGTCGATCTCACAACAAGCGTTCGATGAAATGGTTAAAGAAAACATAGACGATCTAGGCATGGAACCGACGGAAGCCCTAAGCGACGCCA...

CDS

Download CDS FASTA

1389 bp · TkA04G420470|TK1151|CDS

ATGGCTCCCGCAAAGCCAAGCATTCGGTCGATCTCACAACAAGCGTTCGATGAAATGGTTAAAGAAAACATAGACGATCTAGGCATGGAACCGACGGAAGCCCTAAGCGACGCCATTGAAACCCTCACTCTTCAAGGCGTAGATCTCTCTGGTATCGTCACTACTACACTCCCTGGCGAAACCAATCCCGTGATCCAATCTCTCGACAGAATCAAACAATTACAAAGCTCGGATTGGACAGAGAAAGCAGTCTTAGACGA...

Protein

Download Protein FASTA

462 aa · TkA04G420470|TK1151|PROTEIN

MAPAKPSIRSISQQAFDEMVKENIDDLGMEPTEALSDAIETLTLQGVDLSGIVTTTLPGETNPVIQSLDRIKQLQSSDWTEKAVLDEALGLLDHLTDLSRVEGSGNSAIAARNGGVELMCSVCSKLADIHRDSALVSALNTLAAFLHDLQSTETFRQSGGPKIIIGILNNATQNVNIINSAFSVIAASATGNEVLKESYVELHIDELIVKIMKNHSKGSIPNLYDTIRVLLSADDLRVVASQVYGYARKFAKIGITEALV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G420470
TK1151 IDTkA04G420470
OH-1004 IDLXL04_038369
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G420470
LocationChr04:105955216-105957525 (-)
DescriptionSimilar to ARMC6: Armadillo repeat-containing protein 6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038369 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009653 anatomical structure morphogenesis Biological Process
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
dme:Dmel_CG5721
hsa:93436
mmu:76813
pon:100172058
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.688
Rank 1 · TkA04G420470 · TK1151
Nucleus0.242
Rank 2 · TkA04G420470 · TK1151
Golgi apparatus0.130
Rank 3 · TkA04G420470 · TK1151
Cell membrane0.117
Rank 4 · TkA04G420470 · TK1151
Lysosome / Vacuole0.088
Rank 5 · TkA04G420470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF27652ARMC6_N9-56 aa
PF10557Cullin_Nedd818-27 aa
PF30701ARMC687-457 aa
PF24768ARM_ARMC5112-170 aa
PF30699ARM_GAC_2113-441 aa
PF11841ELMO_ARM114-211 aa
PF16782SIL1136-210 aa
PF23744ARM_LRRK2138-217 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G420470PF27652ARMC6_N9568.1e-1967.9
TkA04G420470PF10557Cullin_Nedd818270.113.4
TkA04G420470PF30701ARMC6874571.8e-40139.5
TkA04G420470PF24768ARM_ARMC51121705.9e-0936.4
TkA04G420470PF30699ARM_GAC_21134416.1e-0832.2
TkA04G420470PF11841ELMO_ARM1142110.0003421.3
TkA04G420470PF16782SIL11362100.01115.8
TkA04G420470PF23744ARM_LRRK21382172.1e-0627.0
TkA04G420470PF14496NEL1402420.001818.4
TkA04G420470PF28415SIL1_FES1_HPBP1_C1542010.0002721.2
TkA04G420470PF24768ARM_ARMC51774405.9e-0936.4
TkA04G420470PF29413BEM4-like_N1772190.1712.1
TkA04G420470PF10557Cullin_Nedd82032270.113.4
TkA04G420470PF28415SIL1_FES1_HPBP1_C2473750.0002721.2
TkA04G420470PF22964ZER1-like_2nd2553660.009115.4
TkA04G420470PF11841ELMO_ARM2943830.0003421.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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