TkA04G403270 | RubberDandelionOmics

Gene overview

TkA04G403270

Reference: TK1151 Chr: Chr04 Coordinates: 101422611-101423117 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

507 bp · TkA04G403270|TK1151|cDNA

ATGGCCACCGGTGGTTCGCCGTGGGTAAACGTGAACGACGCTGTATCAGTTCTTTACAGAATTGCGTTTTCCGGGGAAATTCCAGAAATCCCGGAAGAATTTTCCGATAAAGGAAAGGACTTTATTAAAAAGTGTTTGATTCGGGATCCAAGAGAGAGGTGGACGGCGAAACAGCTTCTCAATCACCCGTATCTTCAACAATTCGACGACAATTCAAACGAAATCATCTCTGAAAAGATCTATACGGATTCTCCGACGAG...

CDS

Download CDS FASTA

507 bp · TkA04G403270|TK1151|CDS

ATGGCCACCGGTGGTTCGCCGTGGGTAAACGTGAACGACGCTGTATCAGTTCTTTACAGAATTGCGTTTTCCGGGGAAATTCCAGAAATCCCGGAAGAATTTTCCGATAAAGGAAAGGACTTTATTAAAAAGTGTTTGATTCGGGATCCAAGAGAGAGGTGGACGGCGAAACAGCTTCTCAATCACCCGTATCTTCAACAATTCGACGACAATTCAAACGAAATCATCTCTGAAAAGATCTATACGGATTCTCCGACGAG...

Protein

Download Protein FASTA

168 aa · TkA04G403270|TK1151|PROTEIN

MATGGSPWVNVNDAVSVLYRIAFSGEIPEIPEEFSDKGKDFIKKCLIRDPRERWTAKQLLNHPYLQQFDDNSNEIISEKIYTDSPTSILDQDVWNSMEEPCSSSSTVGSDFAQSTCSSNYLRQRIKQLADKSEIPKWRCEREETKWITIRINEDVTEKQLWGGERCGR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G403270`
TK1151 ID	TkA04G403270
OH-1004 ID	LXL04_038177
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 91.667 / OH-1004 40.849 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G403270

Location Chr04:101422611-101423117 (-)

Description Similar to MAPKKK18: Mitogen-activated protein kinase kinase kinase 18

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g05100`	Component of the abscisic acid (ABA) signaling pathway that acts as ABA signal transducer in the context of abiotic stresses.	An abscisic acid inducible Arabidopsis MAPKKK, MAPKKK18 regulates leaf senescence via its kinase activity.2015 · DOI: 10.1007/s11103-015-0295-0 Arabidopsis ABA-Activated Kinase MAPKKK18 is Regulated by Protein Phosphatase 2C ABI1 and the Ubiquitin-Proteasome Pathway.2015 · DOI: 10.1093/pcp/pcv146
`At2g32510`	Component of the abscisic acid (ABA) signaling pathway that may act as ABA signal transducer in the context of abiotic stresses.	No verified direct reference in this release
`At1g63700`	Functions in a MAP kinase cascade that acts as a molecular switch to regulate the first cell fate decisions in the zygote and the early embryo.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038177 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000302 response to reactive oxygen species Biological Process

GO:0006468 protein phosphorylation Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0007165 signal transduction Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009653 anatomical structure morphogenesis Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process

GO:0010029 regulation of seed germination Biological Process

KEGG gene cross-reference

ath:AT1G05100

ath:AT1G54960

ath:AT2G32510

ath:AT3G50310

ddi:DDB_G0283265

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.541

Rank 1 · TkA04G403270 · TK1151

Nucleus0.472

Rank 2 · TkA04G403270 · TK1151

Cell membrane0.099

Rank 3 · TkA04G403270 · TK1151

Mitochondrion0.051

Rank 4 · TkA04G403270 · TK1151

Endoplasmic reticulum0.045

Rank 5 · TkA04G403270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase26-65 aa

PF23974DUF7300134-159 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G403270	`PF00069`	Pkinase	26	65	1.8e-07	31.6
TkA04G403270	`PF23974`	DUF7300	134	159	0.088	13.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZVP5`	Arabidopsis thaliana	sp\|Q9ZVP5\|M3K18_ARATH Mitogen-activated protein kinase kinase kinase 18	46.200%	Swiss-Prot	Medium
`O80888`	Arabidopsis thaliana	sp\|O80888\|M3K17_ARATH Mitogen-activated protein kinase kinase kinase 17	46.100%	Swiss-Prot	Medium
`Q9CAD5`	Arabidopsis thaliana	sp\|Q9CAD5\|YODA_ARATH Mitogen-activated protein kinase kinase kinase YODA	40.300%	Swiss-Prot	Low

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