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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G390560
Reference: TK1151 Chr: Chr04 Coordinates: 98219515-98223690 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2545 bp · TkA04G390560|TK1151|cDNA

AGTAAGATGCTATTGGTGACTGGACCCATTCAGTCATTCATCCACATAGAGATTGGATCCAAATTCCCATTGTACTAACCAACTAACCCTAGGGTCCAACAAAGGACCACCATTGGCTTGATTAGGTGTAAACAGTTCATCCACAAAAAATATTAATTTTCATCACATGCCACACACACAAGAAAATCAATACAGGACAAAACCAATTAGTTATTAAATCAAAACTCATCACCACCACTTACTTCATGACCGGCTGAAAT...

CDS

Download CDS FASTA

1071 bp · TkA04G390560|TK1151|CDS

ATGATTTTGGCGGTTGTTGTTTTGGTTTGTGGGACCATGTTGTATCGGTTTAAGAAACCGCAAGGGAGCCCGTTGACGGTAATTTGGCGGGTGGTGTTTTTGGCGATAAAGAACCGGAAGCTTACGTATTCGAAACCCGAGTTTCTTAATGATTATATCAACTCAAAAGTTCCACATACAAAGAGATTCAGGTGTCTCGACAAGGCGGCCGTGCTAGACGATTATGCATCTACAGAAGAAAACCGAAACAATCCATGGAT...

Protein

Download Protein FASTA

356 aa · TkA04G390560|TK1151|PROTEIN

MILAVVVLVCGTMLYRFKKPQGSPLTVIWRVVFLAIKNRKLTYSKPEFLNDYINSKVPHTKRFRCLDKAAVLDDYASTEENRNNPWIVSTVTQVEEVKMVINLIPIWSTCILFWTVYSQMNTFTIEQATLMNRNVSSFTIPAGSFSVFLFISILLFTSLNERVVIPLARKITHDPKGLRSLQRVGIGLVLSIFGMVASAIVEKRRRVMHSETTEISAFWLVPQFFLVGAGEAFAYVGQLEFFIREAPERMKSMSTGLFLS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G390560
TK1151 IDTkA04G390560
OH-1004 IDLXL04_038117
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 61.379
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G390560
LocationChr04:98219515-98223690 (+)
DescriptionSimilar to NPF6.4: Protein NRT1/ PTR FAMILY 6.4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g21670 Low-affinity nitrate transporter. No verified direct reference in this release
At2g26690 Low-affinity proton-dependent nitrate transporter. No verified direct reference in this release
At1g12110 Dual affinity nitrate transporter.
CHL1 is a dual-affinity nitrate transporter of Arabidopsis involved in multiple phases of nitrate uptake.1999 · DOI: 10.1105/tpc.11.5.865
The nitrate transporter AtNRT1.1 (CHL1) functions in stomatal opening and contributes to drought susceptibility in Arabidopsis.2003 · DOI: 10.1105/tpc.006312
Switching between the two action modes of the dual-affinity nitrate transporter CHL1 by phosphorylation.2003 · DOI: 10.1093/emboj/cdg118
Transcript profiling in the chl1-5 mutant of Arabidopsis reveals a role of the nitrate transporter NRT1.1 in the regulation of another nitrate transporter, NRT2.1.2004 · DOI: 10.1105/tpc.104.024380
The Arabidopsis NRT1.1 transporter participates in the signaling pathway triggering root colonization of nitrate-rich patches.2006 · DOI: 10.1073/pnas.0605275103
A genetic screen for nitrate regulatory mutants captures the nitrate transporter gene NRT1.1.2009 · DOI: 10.1104/pp.109.140434
Nitrate-regulated auxin transport by NRT1.1 defines a mechanism for nutrient sensing in plants.2010 · DOI: 10.1016/j.devcel.2010.05.008
The herbicide sensitivity gene CHL1 of Arabidopsis encodes a nitrate-inducible nitrate transporter.1993 · DOI: 10.1016/0092-8674(93)90399-b
The Arabidopsis CHL1 protein plays a major role in high-affinity nitrate uptake.1998 · DOI: 10.1073/pnas.95.25.15134
At3g54140 Peptide transporter.
AtPTR1, a plasma membrane peptide transporter expressed during seed germination and in vascular tissue of Arabidopsis.2004 · DOI: 10.1111/j.1365-313x.2004.02224.x
AtPTR1 and AtPTR5 transport dipeptides in planta.2008 · DOI: 10.1104/pp.108.123844
At1g62200 Protein NRT1/ PTR FAMILY 8.5. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038117 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006857 oligopeptide transport Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009611 response to wounding Biological Process
GO:0009635 response to herbicide Biological Process
GO:0009734 auxin-activated signaling pathway Biological Process
GO:0009753 response to jasmonic acid Biological Process
GO:0009860 pollen tube growth Biological Process
GO:0010167 response to nitrate Biological Process
GO:0010540 basipetal auxin transport Biological Process
GO:0015031 protein transport Biological Process
GO:0015706 nitrate transmembrane transport Biological Process
GO:0042128 nitrate assimilation Biological Process
KEGG gene cross-reference
ath:AT1G12110
ath:AT2G26690
ath:AT3G21670
ath:AT3G54140
ath:AT5G01180
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.782
Rank 1 · TkA04G390560 · TK1151
Endoplasmic reticulum0.081
Rank 2 · TkA04G390560 · TK1151
Cytoplasm0.076
Rank 3 · TkA04G390560 · TK1151
Lysosome / Vacuole0.062
Rank 4 · TkA04G390560 · TK1151
Mitochondrion0.030
Rank 5 · TkA04G390560 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00854PTR21-280 aa
PF07690MFS_12-268 aa
PF15420Abhydrolase_9_N2-22 aa
PF09716ETRAMP3-19 aa
PF15420Abhydrolase_9_N125-201 aa
PF13273DUF4064138-153 aa
PF09716ETRAMP147-158 aa
PF05978UNC-93170-218 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G390560PF00854PTR212804.9e-61207.5
TkA04G390560PF07690MFS_122687.5e-0625.8
TkA04G390560PF15420Abhydrolase_9_N2220.1712.6
TkA04G390560PF09716ETRAMP3191.79.4
TkA04G390560PF15420Abhydrolase_9_N1252010.1712.6
TkA04G390560PF13273DUF40641381534.68.2
TkA04G390560PF09716ETRAMP1471581.79.4
TkA04G390560PF05978UNC-931702180.0004220.3
TkA04G390560PF13273DUF40641862074.68.2
TkA04G390560PF05978UNC-932263270.0004220.3
TkA04G390560PF13273DUF40642592664.68.2
TkA04G390560PF15420Abhydrolase_9_N2613360.1712.6
TkA04G390560PF07690MFS_12623257.5e-0625.8
TkA04G390560PF09716ETRAMP2933361.79.4
TkA04G390560PF13273DUF40642993334.68.2
TkA04G390560PF14466PLCC3153490.1912.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LVE0Arabidopsis thalianasp|Q9LVE0|PTR33_ARATH Protein NRT1/ PTR FAMILY 6.462.700%Swiss-ProtHigh
Q9SZY4Arabidopsis thalianasp|Q9SZY4|PTR27_ARATH Protein NRT1/ PTR FAMILY 6.247.700%Swiss-ProtMedium
Q05085Arabidopsis thalianasp|Q05085|PTR7_ARATH Protein NRT1/ PTR FAMILY 6.345.500%Swiss-ProtMedium
Q9M390Arabidopsis thalianasp|Q9M390|PTR1_ARATH Protein NRT1/ PTR FAMILY 8.139.100%Swiss-ProtMedium
Q93Z20Arabidopsis thalianasp|Q93Z20|PTR17_ARATH Protein NRT1/ PTR FAMILY 8.540.400%Swiss-ProtMedium

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